Query= MSMg01no424_j11.b1 MSMg01no424_j11.b1 CHROMAT_FILE:
MSMg01no424_j11.b1 PHD_FILE: MSMg01no424_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:35 2005
(575 letters)
>mm_chr4_135256753_135257726
Length = 974
Score = 746 bits (386), Expect = 0.0
Identities = 471/514 (91%), Gaps = 28/514 (5%)
Strand = Plus / Minus
Query: 1 tcagttccagcgacggcatgcaaggtggcagctggtaagtagcattgacccttaggatct 60
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 492 tcagttccagcgacggcatgcaaggtggcagctggtaggtagcgttgacccttaggatct 433
Query: 61 tctccatctgggtgagcaccagggtgggcggggctagctccactgtcagaaatagaatcg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 432 tctccatctgggtgagcaccagggtgggcggggctagctccactgtcagaaacagaatcg 373
Query: 121 gaccagtcaaaccacccggggtgacccagtctctattcttctgtctctgtccggtccaga 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 372 gaccagtcaaaccacccggggtgacctagtctctattcttctgtctctgtccggtccaga 313
Query: 181 gagcatcccattgcattttccaaacatcgtctgtgctgcaagctccttatagctctttta 240
||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 312 gagcatcccattgcatttttcaaacattgtctgtgctgcaagcttcttatagctctttta 253
Query: 241 tcccctatttatgcctc--ggagggaagcatcactgtctgactatgcgtgtgcacgtgta 298
||||| | | || ||| ||||||||||||||||||| ||||||| ||||||||
Sbjct: 252 tcccccact-at--ctctgggagggaagcatcactgtccgactatgtgtgtgcac----- 201
Query: 299 tgtgcgggtgcgcatgcctgtgagtgtgagtgcagagatcagaggtgagcagtcagtgta 358
||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 200 -------------atgcctgtgagtgtgagcgcagaggtcagaggtgagcagtcagtgta 154
Query: 359 tgcttccactgaactccactgcgtgttttaagtcagggtctctcactgagcctgaggctc 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 153 tgcttccactgaactccactgcgtgttttaagtcagggtctctcactgagcctggggctc 94
Query: 419 actgaagcatttgacttctgagctctctcccaagccttcaccaactctattttagaaaat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 actgaagcatttgacttctgagctctctcccaagccttcaccaactctattttagaaaat 34
Query: 479 aaag----accctataaccagtgattctcaacct 508
|||| ||| |||| |||||||||||||||||
Sbjct: 33 aaagtaagaccttata-ccagtgattctcaacct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space: 544660
Effective search space used: 544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_j11.g1 MSMg01no424_j11.g1 CHROMAT_FILE:
MSMg01no424_j11.g1 PHD_FILE: MSMg01no424_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:35 2005
(241 letters)
>mm_chr4_135067249_135067889
Length = 641
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%)
Strand = Plus / Plus
Query: 1 atgatattagatggaaaccacagtaggtaggaagccatgcctggctctaggctctacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgatattagatggaaaccacagtaggtaggaagccatgcctggctctaggctctacagt 260
Query: 61 cccacctcccccaacaagactgggaagatactcaggcccggggtctacatgccagctccc 120
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccacctcccccgacaagactgagaagatactcaggcccggggtctacatgccagctccc 320
Query: 121 tcatgacctcttcaggcccatccctaggtcaggtggacaggggtcatctgccactcctca 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgtgacctcttcaggcccatccctaggtcaggtggacaggggtcatctgccactcctca 380
Query: 181 cacctgcagagactgccagtccaatgggcgctctaagggctgctccaccaagtgtcaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctgcagagactgccagtccaatgggcgctctaagggctgctccaccaagtgtcaccc 440
Query: 241 g 241
|
Sbjct: 441 g 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
