BAC Information

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BAC

Clone NameMSMg01-424N05
Chromosome4 (Build37)
Map Location 119,129,267 - 119,295,169
singlet/doubletdoublet
Overlap geneBC057371, LOC666766, LOC384052, AA415398, Foxj3
Upstream geneMpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12
Downstream geneGuca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424N05.T7 (MSMg01no424_n05.b1)MSMg01-424N05.TJ (MSMg01no424_n05.g1)
ACCAG518654AG518655
length751754
length of high quality
(start - end)		565 (45 - 609)583 (81 - 663)
definitionCHROMAT_FILE: MSMg01no424_n05.b1 PHD_FILE: MSMg01no424_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:52 2005CHROMAT_FILE: MSMg01no424_n05.g1 PHD_FILE: MSMg01no424_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,129,267 - 119,129,828)(119,294,587 - 119,295,169)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTGTACACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC
TGCCTCCCGAGTGCTGGGATTAAAGGCGTGAGTCATCACCGCCTGGCTGT
CTGAAAGTGTTTTTTGTTTGCCATTCTTTTTGGGGTCCTCAGTGAAGATG
CGCTTTATCTTCGTGTGTGATATGCTGATACCTAAAACAATCCCAATTCC
CAAGAGCTTTGTCAAAGGAGGTTTACTTGACCCCAAAGACTATACCAGGT
TAAAAAGATGATACAGGTACTTCATGGCATGGCTAAGTTTCCCAACAGGC
CAGCATGTCATTCCATTGCATTAAAATCTTCACAGTGAAAATTCATGTTT
TCAAGGGCAGGGCTGAGGTATTACCCTTGAAAGCCCAAAGGCGGCCCGGG
GTGGGGTGGGGCATTCTTTCTCTGTTGTAAGCACACACTGGAGGTTACAA
ATTACATCATGTCTGGGAACCTATGTTTAGCAAAGGCCATTCTGAGGAGG
TGACCTGCATTCTTACAATAGTAACACTTTAATTGTACATCCTGGACCGT
GCTGTTCCAAAGGGCCTCGGATGACCACAAGTCTCCCCCAATGGCTCCAC
CACCTCTAAGTCTCACCATGCCCGGCCGCAGCTCCAGGTGCAGATGAGGC
AACTCCGTGTTCCAATGACAATGAGAAAAGACATCCTGCATGCCCAGAAA
G

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCTTAAGAGTCCATAGT
AAAAGGACATTAACTGACTCCTTTGAGCTGTATGCATGTACATGCACACG
TATGTCAGCAATCTTCATATACATACCAGACACATACATAATAAATAGAA
AAAAACTTAAAAGTAAAAGGTGGACAGCAACTGGGAACAACACTTGTGAT
TGTCCTATGGCCTCAAAGTACAACTGTAGATACAAACACACAAGGGGCAA
GGCAGGGAGACAGACTATGCCAAACCTGATTCTTTAAACATGGCCATTAT
TCTGGCAGGACTCTTATATGTAATGGTTTCCTATATCAATTGCCCAATTT
ATTAGAAATTCTTATGTGTCCTTTAAGAACACTACCATTGGGCTGGAGAG
ATGGCTCAGCTGTTAAGAGCACTGGCTACTCTTCCCAAAATCCTGAGTTC
AATTCCCAGCAACCACATAGTAGCTTATAACCATCTGTAATGGGATCCAA
TGCCCTCTTCTGTTATGTCTGAAGACAACTACAATGTATTCATATACATA
ACTAAATAAATCTTTAAATATTAAAAAAAAACCCACACCATTGCAAAAGC
CATGTCTTTAAATAAAATGATGCTTCTCCCCCACCCCCTTTATCTCTCTC
TCTGGGGGAAAGGCGGGGGTGGCAAAACCTTCTTATGTATCTCTTGTTTG
CAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_n05.b1 MSMg01no424_n05.b1 CHROMAT_FILE:
MSMg01no424_n05.b1 PHD_FILE: MSMg01no424_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:52 2005
         (565 letters)



>mm_chr4_119129064_119130028
          Length = 965

 Score = 1064 bits (550), Expect = 0.0
 Identities = 559/562 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactttgtacaccaggctggcctcgaactcagaaatccgcctgcctctgcctcc 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtagatcaggctggcctcgaactcagaaatccgcctgcctctgcctcc 263

                                                                       
Query: 64  cgagtgctgggattaaaggcgtgagtcatcaccgcctggctgtctgaaagtgttttttgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgagtgctgggattaaaggcgtgagtcatcaccgcctggctgtctgaaagtgttttttgt 323

                                                                       
Query: 124 ttgccattctttttggggtcctcagtgaagatgcgctttatcttcgtgtgtgatatgctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgccattctttttggggtcctcagtgaagatgcgctttatcttcgtgtgtgatatgctg 383

                                                                       
Query: 184 atacctaaaacaatcccaattcccaagagctttgtcaaaggaggtttacttgaccccaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atacctaaaacaatcccaattcccaagagctttgtcaaaggaggtttacttgaccccaaa 443

                                                                       
Query: 244 gactataccaggttaaaaagatgatacaggtacttcatggcatggctaagtttcccaaca 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 gactataccaggttaaaaagatgatacagggacttcatggcatggctaagtttcccaaca 503

                                                                       
Query: 304 ggccagcatgtcattccattgcattaaaatcttcacagtgaaaattcatgttttcaaggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggccagcatgtcattccattgcattaaaatcttcacagtgaaaattcatgttttcaaggg 563

                                                                       
Query: 364 cagggctgaggtattacccttgaaagcccaaaggcggcccggggtggggtggggcattct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagggctgaggtattacccttgaaagcccaaaggcggcccggggtggggtggggcattct 623

                                                                       
Query: 424 ttctctgttgtaagcacacactggaggttacaaattacatcatgtctgggaacctatgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctctgttgtaagcacacactggaggttacaaattacatcatgtctgggaacctatgtt 683

                                                                       
Query: 484 tagcaaaggccattctgaggaggtgacctgcattcttacaatagtaacactttaattgta 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tagcaaaggccattctgaggaggtgacctgcattcttacaatagtaacactttaattgta 743

                                 
Query: 544 catcctggaccgtgctgttcca 565
           ||||||||||||||||||||||
Sbjct: 744 catcctggaccgtgctgttcca 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_n05.g1 MSMg01no424_n05.g1 CHROMAT_FILE:
MSMg01no424_n05.g1 PHD_FILE: MSMg01no424_n05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:52 2005
         (583 letters)



>mm_chr4_119294399_119295381
          Length = 983

 Score = 1089 bits (563), Expect = 0.0
 Identities = 578/583 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaccttaagagtccatagtaaaaggacattaactgactcctttgagctgtatgcatgta 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 771 aaaccttaagagtccatagtaaaaggacattaactggctcctttgagctgtatgcatgtg 712

                                                                       
Query: 61  catgcacacgtatgtcagcaatcttcatatacataccagacacatacataataaatagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 catgcacacgtatgtcagcaatcttcatatacataccagacacatacataataaatagaa 652

                                                                       
Query: 121 aaaaacttaaaagtaaaaggtggacagcaactgggaacaacacttgtgattgtcctatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaaacttaaaagtaaaaggtggacagcaactgggaacaacacttgtgattgtcctatgg 592

                                                                       
Query: 181 cctcaaagtacaactgtagatacaaacacacaaggggcaaggcagggagacagactatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cctcaaagtacaactgtagatacaaacacacaaggggcaaggcagggagacagactatgc 532

                                                                       
Query: 241 caaacctgattctttaaacatggccattattctggcaggactcttatatgtaatggtttc 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 531 caaacctgattctttaaacatggccattattttggcaggactcttatatgtaatggtttc 472

                                                                       
Query: 301 ctatatcaattgcccaatttattagaaattcttatgtgtcctttaagaacactaccattg 360
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 471 ctatatcaattgcccaatttattagaaattcctatgtgtcttttaagaacactaccattg 412

                                                                       
Query: 361 ggctggagagatggctcagctgttaagagcactggctactcttcccaaaatcctgagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggctggagagatggctcagctgttaagagcactggctactcttcccaaaatcctgagttc 352

                                                                       
Query: 421 aattcccagcaaccacatagtagcttataaccatctgtaatgggatccaatgccctcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aattcccagcaaccacatagtagcttataaccatctgtaatgggatccaatgccctcttc 292

                                                                       
Query: 481 tgttatgtctgaagacaactacaatgtattcatatacataactaaataaatctttaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgttatgtctgaagacaactacaatgtattcatatacataactaaataaatctttaaata 232

                                                      
Query: 541 ttaaaaaaaaacccacaccattgcaaaagccatgtctttaaat 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttaaaaaaaaacccacaccattgcaaaagccatgtctttaaat 189


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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