Query= MSMg01no424_o12.b1 MSMg01no424_o12.b1 CHROMAT_FILE:
MSMg01no424_o12.b1 PHD_FILE: MSMg01no424_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:58 2005
(244 letters)
>mm_chr4_99666261_99666904
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Plus
Query: 1 tgaggcatccacagcaccctggccctggccaaggatgtacacttaccctgatagcctcca 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgaggcacccacagcaccctggccctggccaaggatgtacacttaccctgatagcctcca 260
Query: 61 aaggttcaaatggcctttgttgcctccatttaaatgagttgtctaatggaagatgtctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaggttcaaatggcctttgttgcctccatttaaatgagttgtctaatggaagatgtctcc 320
Query: 121 tgagagtgtgttcttgctgtgttcactaccgattgagctcactcagagccccctcttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagtgtgttcttgctgtgttcactaccgattgagctcactcagagccccctcttctc 380
Query: 181 cttctcaactccttctccccttcccaactcaggatccactggttgtgatccctagaggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttctcaactccttctccccttcccaactcaggatccactggttgtgatccctagaggtg 440
Query: 241 ggga 244
||||
Sbjct: 441 ggga 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no424_o12.g1 MSMg01no424_o12.g1 CHROMAT_FILE:
MSMg01no424_o12.g1 PHD_FILE: MSMg01no424_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:58 2005
(422 letters)
>mm_chr4_99834935_99835756
Length = 822
Score = 723 bits (374), Expect = 0.0
Identities = 404/414 (97%), Gaps = 2/414 (0%)
Strand = Plus / Minus
Query: 9 tgttcgttcattcattcatccaactaatacttattgagaaactagtaggggttagaaccc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgttcgttcattcattcatccaactaatacttattgagaaactagtaggggttagaaccc 441
Query: 69 agagatgacatccattccctgttctcgaggacacaaactttaagaggaaaaaaataaaaa 128
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agaaatgacatccattccctgttctcgaggacacaaactttaagaggaaaaaaataaaaa 381
Query: 129 tgaaacctgggtttcaataagcaggcataatagaaagccccccttacccagtcttgtgga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgaaacctgggtttcaataagcaggcataatagaaagccccccttacccagtcttgtgga 321
Query: 189 agccagaatggcaagagttgttcacactggatatggaggcaaattccagataactagatt 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 agccagaatggcaagagttgttcacactggatatggaggcaaattccagataactagaat 261
Query: 249 ttataaaaaaaaaaaaaagccttccacctctagccagaaagagaaacgggtgattgtcag 308
| | ||||||||||||||||||||||||||| | |||||||||||| |||||||||||||
Sbjct: 260 t-a-aaaaaaaaaaaaaagccttccacctctggtcagaaagagaaatgggtgattgtcag 203
Query: 309 tcaagggcaaagtaactgtcaatgaaggaccatgacctctaagagaggggaaatatgaac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 202 tcaagggcaaagtaactgtcaatgaaggaccatgacctctaagagaggggaaataggaac 143
Query: 369 tgagttctataagagagcatccaggtcaaagtggctggggaacaagaggctggg 422
||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 142 tgagtcctataagagagcatccaggtcaaagtggttggggaacaagaggctggg 89
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
