TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACAGATCTTACGCAAGATTTGTAGGAGGTTCAGTAAAGACTTTTACTCTT
TTTTTTTTCTTAATATGTAGTTGGAAGACCTAGATTAGATTTTTTTCCTT
TCTTTATCTGATTTTTAAATTAGTAAAGAATTTAGGCTCACCAATGACCT
TCAAAAAACAAGGTTTTTGGTTGTTTTTCAGTATATCAACTTAACCATTC
TTATAAACTTATAAAAGTATAGACGTTTGCCTTAAAACACATAAGAAATT
ATCAACCTTGCTTCTTCATTATTATGTGCATTTTCGTTTGTTTGTTTCAT
GGTACATTAGTTATTTGAAGACAGATGACAGATTACCACAAATTTATAGG
CTTTTGATGCCCATTTATCACCCCATGATTCCTTTAGGTTATAATGTGAA
CATAATTTACATAGGCTTTCTGCTAACCGTGTCACAAGGCTGAGGGGAAG
GTAGCATACCCTTCTGAAACATGACTAGGAAGGATTTCACTAGCAAATGT
CCTGAGTCAAACAAGGTGAAAATATCTGAAATGTATTGGAGCTTATTTAC
TTTAAGGTAGGAAATTTTACAATTCCCACACACAACATCCAAAACGGGAG
GAGCAGAAAAACAGGCAAAAAAACTTTCCCCGAAACTCTTCTGGAATTAT
TTCCCTGGAAGAATTTCCCAGGGGAGGGCTTTATTTGAAAAAACCCCTCT
TTTGTATAACTTATGGCCCCAAACAATTGGGCACAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTTACTGTCACCCGCTGAACCTTTGATAGCTGATCCATTATTTTTC
CCAAGGGAAACTCTTGCCCGCAGTGGATCTGGAAGAGAAGAGAGGTATAG
AAGGAGGAAAGGGAGGGCCGCNNNGNNNNNNTNCCCTCGGCGGCGGTTCC
TCGCGTCGTCTNCGTGNTTTCTCTCCGTCCCGTCCCGTGCGCGTGCTGCC
TTTGTTTTTCTGCTGCGCCGCTCCGCTTCTCCTTCCTTCCTCCCCTCCTC
CCTCCCCCCTTCCTCCCGTTTCTTTTTTTTTTTTTTCCCCCTCTCGTTTT
CTCTCCCTGTTTTTTTTTTTTTTCCTCCCCTTCCTTTGGGGTTGGGATCT
TTTCGCTTTTGTTCTCTCCGCCCCCCTTTCTTCTTTCCTTCCTTTCTTTC
CCTCTCTTCTCCTTCCTTTCTTCTCCTCCCCTTTTTTTCCCTTTTCCTTT
TGCTTTCTCTCGCCTTCTTCTTCGCTTTCTTCCTTCCCCTCTGTTCTCCT
TTCCTCTTCTTCCCTTCTCTCCCTGTTTTTCTCTTTCTCCTTTCCCCCTT
TTCTTCTCCTCTTTTCCTCTTTCTTTTGCTCCTCCCTTCCCCCTTCTTTC
CTCTTCGCTTCTTCCCTTTCTTTCCCGCTTTCTCTTTCCCCCCTTTCTCT
CCTTCCCCCCCTCCCTTCCCTCTTTTTCTTTCCTTCTTTTTCCCTCTTTC
TTTTTCCTTTTCCCTCCTGTTCTTCTTCTTCCCTCCTTCTTCCCTTTCCC
CCTTTCCCTTTCCCTCTCTCTCCTCCCCTGTTTCTCCTTCCCCCGTTTTT
TCCCGTCTTCCTCCCN

Query= MSMg01no426_a14.b1 MSMg01no426_a14.b1 CHROMAT_FILE:
MSMg01no426_a14.b1 PHD_FILE: MSMg01no426_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:25 2005
         (495 letters)



>mm_chr4_51430308_51431204
          Length = 897

 Score =  917 bits (474), Expect = 0.0
 Identities = 488/494 (98%), Gaps = 4/494 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagatcttacgcaagatttgtaggaggttcagtaaagacttttactc---ttt 61
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||   |||
Sbjct: 536 gaattcacagatcttaggcaagatttgtaggaggttcagtaaagacttttactctttttt 477

                                                                       
Query: 62  tttttttcttaatatgtagttggaagacctagattagatttttttcctttctttatctga 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 476 tttttttcttaatatgtagttggaagacctagattaga-ttttttcctttctttatctga 418

                                                                       
Query: 122 tttttaaattagtaaagaatttaggctcaccaatgaccttcaaaaaacaaggtttttggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttttaaattagtaaagaatttaggctcaccaatgaccttcaaaaaacaaggtttttggt 358

                                                                       
Query: 182 tgtttttcagtatatcaacttaaccattcttataaacttataaaagtatagacgtttgcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgtttttcagtatatcaacttaaccattcttataaacttataaaagtatagacgtttgcc 298

                                                                       
Query: 242 ttaaaacacataagaaattatcaaccttgcttcttcattattatgtgcattttcgtttgt 301
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttaaaacacataagaaattattaaccttgcttcttcattattatgtgcattttcgtttgt 238

                                                                       
Query: 302 ttgtttcatggtacattagttatttgaagacagatgacagattaccacaaatttataggc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttgtttcatggtacattagttatttgaagacagatgacagattaccacaaatttataggc 178

                                                                       
Query: 362 ttttgatgcccatttatcaccccatgattcctttaggttataatgtgaacataatttaca 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttttgatgcccatttatcaccccatgattcctttaggttataatgtgaacataatttaca 118

                                                                       
Query: 422 taggctttctgctaaccgtgtcacaaggctgaggggaaggtagcatacccttctgaaaca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 taggctttctgctaaccgtgtcacaaggctgaggggaaggtagcatacccttctgaaaca 58

                         
Query: 482 tgactaggaaggat 495
           ||||||||||||||
Sbjct: 57  tgactaggaaggat 44


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 897
Length adjustment: 10
Effective length of query: 485
Effective length of database: 887
Effective search space:   430195
Effective search space used:   430195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)