Query= MSMg01no426_b04.b1 MSMg01no426_b04.b1 CHROMAT_FILE:
MSMg01no426_b04.b1 PHD_FILE: MSMg01no426_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:28 2005
(536 letters)
>mm_chr4_126254559_126255494
Length = 936
Score = 1009 bits (522), Expect = 0.0
Identities = 528/530 (99%)
Strand = Plus / Minus
Query: 5 gaattctcgctgtgctacctggactctcgcagaacatttaccttgagtaggaaatttgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctcgctgtgctacctggactctcgcagaacatttaccttgagtaggaaatttgcc 510
Query: 65 cgagcagagattcaaaagttcctccatgttttcttttttgtcattcttccttggttgaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 cgagcagagattcaaaagttcctccatgttttcttttttgtcattcttccttggttgaca 450
Query: 125 tttctcctcaggctgagatgtaaactgtccagtgcacaaatccagcagctcgtccatgtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttctcctcaggctgagatgtaaactgtccagtgcacaaatccagcagctcgtccatgtt 390
Query: 185 ggcgtccatggcattctcgtccatgctggccagtggcaactggggcttcacagcctgata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggcgtccatggcattctcgtccatgctggccagtggcaactggggcttcacagcctgata 330
Query: 245 tcgatggcggtgatttctaatgtttaaaaatctacaagtacagtgaagtgtcggaaatta 304
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 329 tcgatggcggtgatttctaatgtttaaaaatctacgagtacagtgaagtgtcggaaatta 270
Query: 305 cccagaggagagacaaacggcaggtaaaaacctcctgacttccagcaccagggttagaag 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cccagaggagagacaaacgacaggtaaaaacctcctgacttccagcaccagggttagaag 210
Query: 365 ctgaacgtggccagcaagaccgctgagtgggaaaggtgctcgctgcaaagcctgaggcgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ctgaacgtggccagcaagaccgctgagtgggaaaggtgctcgctgcaaagcctgaggcgt 150
Query: 425 tcagttccattcccagaatccacaaggtagagggaactaacttcagcaagttgtcctgtg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 tcagttccattcccagaatccacaaggtagagggaactaacttcagcaagttgtcctgtg 90
Query: 485 accttctcatgtatacggtggctcatctgtgctcacacatgtacacacac 534
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 accttctcatgtatacggtggctcatctgtgctcacacatgtacacacac 40
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_b04.g1 MSMg01no426_b04.g1 CHROMAT_FILE:
MSMg01no426_b04.g1 PHD_FILE: MSMg01no426_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:28 2005
(556 letters)
>mm_chr4_126075794_126076750
Length = 957
Score = 1040 bits (538), Expect = 0.0
Identities = 553/558 (99%), Gaps = 2/558 (0%)
Strand = Plus / Plus
Query: 1 aattaataaggcagaaagattaaaaaagttacacatagaagtttaaagtcttaagaccca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 200 aattaataaggcagaaagattaaaaaagttacacatagaagttaaaagtcttaagaccca 259
Query: 61 atgtaagaaccagttatatcaaatattaaacaagccccccccattaaatgttaaacccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgtaagaaccagttatatcaaatattaaacaagccccccccattaaatgttaaacccat 319
Query: 121 ttaataccaacaaaatgcaggaaatgcccagaaataccaagagagagtaa-ttttttttc 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 320 ttaataccaacaaaatgcaggaaatgcccagaaataccaagagagagtaatttttttttc 379
Query: 180 ctttcttttttttattgggtagtttcttaatttacatttcaaatgttatcccctttcccg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctttcttttttttattgggtagtttcttaatttacatttcaaatgttatcccctttcccg 439
Query: 240 gtttcctcattaaactagccagaatgagggggg-aaaaaaaagagagagatctttgtaaa 298
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 gtttcctcattaaactagccagaatgaggggggaaaaaaaaagagagagatctttgtaaa 499
Query: 299 aataacctgtattcctacatactggatagagacacagtatttttaaagactgtatcataa 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aataacctgtattcctacatactggatagagacacagtatttttaaagactgtatcataa 559
Query: 359 aacaaagaatagtcttgaaagcatgagagtgatcacataagtcataatgtttgtcaacaa 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aacaaagaatagtattgaaagcatgagagtgatcacataagtcataatgtttgtcaacaa 619
Query: 419 gcaaacttccaggtataaaaacacaagtcaacaaaacaaaataaccaccccctattccaa 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acaaacttccaggtataaaaacacaagtcaacaaaacaaaataaccaccccctattccaa 679
Query: 479 agatcaaaagacaaataacagtttaattataggccttgatcaataaagcttctttctgca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agatcaaaagacaaataacagtttaattataggccttgatcaataaagcttctttctgca 739
Query: 539 tttggcagcagctaatgc 556
||||||||||||||||||
Sbjct: 740 tttggcagcagctaatgc 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
