BAC Information

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BAC

Clone NameMSMg01-426I08
Chromosome4 (Build37)
Map Location 101,279,181 - 101,279,567
singlet/doubletsinglet
Overlap geneDnajc6
Upstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460
Downstream geneLeprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I08.T7 (MSMg01no426_i08.b1)MSMg01-426I08.TJ (MSMg01no426_i08.g1)
ACCAG519941AG519942
length803783
length of high quality
(start - end)
387 (64 - 450)459 (69 - 527)
definitionCHROMAT_FILE: MSMg01no426_i08.b1 PHD_FILE: MSMg01no426_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:05 2005CHROMAT_FILE: MSMg01no426_i08.g1 PHD_FILE: MSMg01no426_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCTCAAAATTACTAAAACACCACCAAGAATAATAAATTCTTCCTTTAATA
ATTATTTTTTCTTTAGGGGATTAGGGAGGGAAAGGCCAAAAATAAGATAG
GTTTTAACACTAATACATCATTTCTTTTCTTCCATCATTTTTATCTGCCT
GGTACTGCTTTCCCTCTAAGTAAAGTCCCAGTAAATGCTGCTAAGCTCAG
GCATTACCCTTCTGGTCCATATTTCACCAAAATCCCACCAGCAGAAGGAA
CAAAGATCACTCACCAAGCAGTGTACAACACAGACATTTTTGGGGTTCTG
CAGTAGCCAGTTATACATATTCCTACACACAGCAAACAGGTTGTGTAGAC
TTGGAGCCTGCCTGATGGGCCAACTGCACTCTGAGACCTAAAGGAATGGA
GAAAAGAAATTAATCCTCCCATCTCCATAAGCACATTTCACCATACAACT
TCTGGAAGTGGGATCCTGTCTTCCCTCCCTGGATGGTACAGTGTCTAATG
CCCTTATACCAACTTGATGCTCTTCTTTGTTGATATTTCCTTAATCCTGT
CTTCATCCTCTCTTCTATAAAATGCACCTGTTCTTCTTTTTTTCACTTAC
GTTTTAACCTTTCAAATCGTCTTTCCTCTTCTTATTGTTTCGTCATTTAC
CTCTCCCGTTTTATCACTCTTTAAATCTATCAAGTTATTCCCCAGTTTTT
GTTGCATTTAATCCGTTTCCCCTTCTACCTTTCTCGTTAATCTGACTGCC
CGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTATCCCAGGTGGTTCCGGTTAGACCTTTTGTG
TTTACAGTCCTCTGTTTTATGTAAGATTCCGGTTACCTCAATTGTACCTT
GCGAATTTGTCCACCCAACTTCCTTATTGTCCTCTGCATAAAAAGTCTGA
TGCTCGATTCGAAAATTACACTCAGATTCCACACAACCTCTCCAGTGTGT
GTCTGTTTGTCATTCATCCACGCTTTGCCCACTCGCGTCGAGAGACCAGT
TCAACGCAGACACAGGGACCAAGAGGGTCTGTGGCAATCCAAACTTTGTT
ACTGTGCCATTGATGATGAACCAGAAGGCTAAACTGCCAAGAGTGTATTA
AATTCTTTTCCTCTCATATTTTGGAAAACTGATCTCATGTAGCCCAGTTT
AGCCTACAGCTTGCTAATTACATTGGACTTCTGGTCGTCCTCGCTCCACC
TCAGTGCTGGAATTATAGGCTTGTGCCAATGCAGTCATCTTTGAAACCTT
CTTGAGTGTTTCTTTTTTCCCCTTCTAAAATAATTTGTTGAATTGTCAAT
TCTATACCTATAAAATGGTCTTTGGCCTTTACAATATTCGTTCTCCCTCC
TCTGGTTGTCTCACTGTTATCCTCCTTAGTCTTCTTTTTTGCTTTTAAAT
TCTCCCTTTTCACTCTCTTCTCTTCCTTTACTCCTTCTATATCCCTTCCC
CCTTTTTTTTTTCCCATTTTTTCATTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i08.b1 MSMg01no426_i08.b1 CHROMAT_FILE:
MSMg01no426_i08.b1 PHD_FILE: MSMg01no426_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:05 2005
         (387 letters)



>mm_chr4_101278981_101279767
          Length = 787

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaacaccaccaagaataataaattcttcctttaataattattttttctttaggggatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aaaacaccaccaagaataataaattcttcctttaataattattttttctttaggggatta 528

                                                                       
Query: 61  gggagggaaaggccaaaaataagataggttttaacactaatacatcatttcttttcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gggagggaaaggccaaaaataagataggttttaacactaatacatcatttcttttcttcc 468

                                                                       
Query: 121 atcatttttatctgcctggtactgctttccctctaagtaaagtcccagtaaatgctgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atcatttttatctgcctggtactgctttccctctaagtaaagtcccagtaaatgctgcta 408

                                                                       
Query: 181 agctcaggcattacccttctggtccatatttcaccaaaatcccaccagcagaaggaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agctcaggcattacccttctggtccatatttcaccaaaatcccaccagcagaaggaacaa 348

                                                                       
Query: 241 agatcactcaccaagcagtgtacaacacagacatttttggggttctgcagtagccagtta 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agatcactcaccaagcagtggacaacacagacatttttggggttctgcagtagccagtta 288

                                                                       
Query: 301 tacatattcctacacacagcaaacaggttgtgtagacttggagcctgcctgatgggccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tacatattcctacacacagcaaacaggttgtgtagacttggagcctgcctgatgggccaa 228

                                      
Query: 361 ctgcactctgagacctaaaggaatgga 387
           |||||||||||||||||||||||||||
Sbjct: 227 ctgcactctgagacctaaaggaatgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)