Query= MSMg01no427_n18.b1 MSMg01no427_n18.b1 CHROMAT_FILE:
MSMg01no427_n18.b1 PHD_FILE: MSMg01no427_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:51 2005
(575 letters)
>mm_chr4_123585749_123586723
Length = 975
Score = 1067 bits (552), Expect = 0.0
Identities = 570/576 (98%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 1 acctgtctcaac-acacagtggctcaggagatttttcagagtccttagcactagtgcgga 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acctgtctcaaccacacagtggctcaggagatttttcagagtccttagcactagtgcgga 259
Query: 60 gagcttgccacctgcacactgaatcctaggaggatgtgtttagtagacgagtgagagtgt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gagcttgccacctgcacactgaatcctaggaggatgtgtttagtagacgagtgagagtgt 319
Query: 120 tgacgggaagctagcgcagctttaaatgtcagtctgagcatgctgactgggaatgctttt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgacgggaagctagcgcagctttaaatgtcagtctgagcatgctgactgggaatgctttc 379
Query: 180 tggttggtgcctagcctgtcatgcatgaaacttaattcttgaatgttccaaatggaatgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggttggtgcctagcctgtcatgcatgaaacttaattcttgaatgttccaaatggaatgc 439
Query: 240 tgttaattactttttgtttcttaaatttctttaattagattacattagactttgtttttg 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgttaattacttaaagtttcttaaatttctttaattagattacattagactttgtttttg 499
Query: 300 agacagagctccttgtagtccaggtctctagctaattgcttttccaggatgatcttgcac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agacagagctccttgtagtccaggtctctagctaattgcttttccaggatgatcttgcac 559
Query: 360 tcctattcctcacctcctcggtactgagataacaggtgtggcacaccgcagccagctctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcctattcctcacctcctcggtactgagataacaggtgtggcacaccgcagccagctctc 619
Query: 420 ctatgcttccatgtcccacttaagtcagtattgtacacagcattcaggacgggtcctgcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctatgcttccatgtcccacttaagtcagtattgtacacagcattcaggacgggtcctgcc 679
Query: 480 acctccttgatttcaaactgttaaaatatgtttgtagtccttagcatcagtattcaagta 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 acctccttgatttcaaactgttaaaatatgtttgtagtccttagcatcaatattcaagta 739
Query: 540 agtttttctcagtctggcccttagactacctttcca 575
||||||||||||||||||||||||||||||||||||
Sbjct: 740 agtttttctcagtctggcccttagactacctttcca 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_n18.g1 MSMg01no427_n18.g1 CHROMAT_FILE:
MSMg01no427_n18.g1 PHD_FILE: MSMg01no427_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:51 2005
(607 letters)
>mm_chr4_123734592_123735598
Length = 1007
Score = 1166 bits (603), Expect = 0.0
Identities = 606/607 (99%)
Strand = Plus / Minus
Query: 1 tttaccaggaaaggcactgttcagatctacaggtgaaatagtcttttaaacgaaagtaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tttaccaggaaaggcactgttcagatctacaggtgaaatagtcttttaaacgaaagtaga 748
Query: 61 gacagcattaccagcagacatggactccgaagtttctcaggcagcaagaaccgttcagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gacagcattaccagcagacatggactccgaagtttctcaggcagcaagaaccgttcagat 688
Query: 121 ggcaatcgggtcagcccaagagcaaaagggcagaagccataaatgtagaaagcctccctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggcaatcgggtcagcccaagagcaaaagggcagaagccataaatgtagaaagcctccctc 628
Query: 181 attttgcatctctttagaagacaagctatggtttacgctttttaaaaatgatcgtgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 attttgcatctctttagaagacaagctatggtttacgctttttaaaaatgatcgtgtgtg 568
Query: 241 tttatatgtacaagtcaatttgggcaaagcaataacaaagacatggaagaaatgcagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tttatatgtacaagtcaatttgggcaaagcaataacaaagacatggaagaaatgcagagg 508
Query: 301 cggcactctagagcagccgagagtatcacgtgagcatcacgtgacacagattgctagacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cggcactctagagcagccgagagtatcacgtgagcatcacgtgacacagattgctagacc 448
Query: 361 atgatttgaagactgacttcctaaaccaaatatgcacctttaaggcccaggttaatgaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgatttgaagactgacttcctaaaccaaatatgcacctttaaggcccaggttaatgaca 388
Query: 421 ataaaacagagaacagatgaccatggttgtttaccaaagtcctgtctgctaagggcttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ataaaacagagaacagatgaccatggttgtttaccaaagtcctgtctgctaagggcttgt 328
Query: 481 ctccagcacgcagtgttattggcaggtagtggaaccattgtgaactggagcgtggtccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctccagcacgcagtgttattggcaggtagtggaaccattgtgaactggagcgtggtccaa 268
Query: 541 gggagttaggtctgtgaagggaacgtgggaccccactcacccctcaggctcctctctcta 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 gggagttaggtctgtgaagggaacgtgggaccccactcacccctcagcctcctctctcta 208
Query: 601 tctgttc 607
|||||||
Sbjct: 207 tctgttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
