Query= MSMg01no428_b09.b1 MSMg01no428_b09.b1 CHROMAT_FILE:
MSMg01no428_b09.b1 PHD_FILE: MSMg01no428_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:09 2005
(490 letters)
>mm_chr4_10988182_10989067
Length = 886
Score = 851 bits (440), Expect = 0.0
Identities = 477/492 (96%), Gaps = 8/492 (1%)
Strand = Plus / Plus
Query: 1 gaaataccacaagtggttttttggggttttttttgtcctctctaaggaatttcctacaag 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaataccacaagtggttttttggt-ttttttttgtcctctctaaggaatttcctacaag 259
Query: 61 cttcctgttagggtacatcaggacaggcctgggacattcaacagtgactgtcctgagggg 120
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cttcctgttagggtgcatcaggacaggcctgggacattcaacagtgactgtcctgaggga 319
Query: 121 tgacatcaagacaggtcaccctcttcaaatgagatactactgtccttggccccagcaacc 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 320 tgacatcaagacaggtcaccctcttcaaatgagatactactgtcctcggccccagcaacc 379
Query: 181 tcctccttataggaagataaccaccagtctggtgcaagacaagaggaaagtgcccattca 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcctccttacaggaagataaccaccagtctggtgcaagacaagaggaaagtgcccattca 439
Query: 241 atactcttattta--ggaggagaaaaaactcctccaatttctaagtgtactttgatttta 298
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atactctta---aaaggaggagaaaaaactcctccaatttctaagtgtactttgatttta 496
Query: 299 tttcctcctctgaggaagaattcctgacagggaggagctgaaggaggtgccatagggaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttcctcctctgaggaagaattcctgacagggaggagctgaaggaggtgccatagggaag 556
Query: 359 gtaaagccagtggtaccaccagctatgacccagagcgctccaggaggtaccatctgcttc 418
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtaaagccaggggtaccaccagctatgacccagagcgctccaggaggtaccatctgcttc 616
Query: 419 agagagcctgagcacccggacacgcctgcacagaatatagagatgctctctctctctatt 478
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 617 agagagcctgagcacccggacatgcctgcacagaatatagagatgctctctctct--att 674
Query: 479 aaagatatgagc 490
||||||||||||
Sbjct: 675 aaagatatgagc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 886
Length adjustment: 10
Effective length of query: 480
Effective length of database: 876
Effective search space: 420480
Effective search space used: 420480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_b09.g1 MSMg01no428_b09.g1 CHROMAT_FILE:
MSMg01no428_b09.g1 PHD_FILE: MSMg01no428_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:09 2005
(459 letters)
>mm_chr4_11138545_11139403
Length = 859
Score = 857 bits (443), Expect = 0.0
Identities = 455/459 (99%)
Strand = Plus / Minus
Query: 1 ccacatagttgctgtcctccaccatccttcttgcttttcttctgttgacatcctgtagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ccacatagttgctgtcctccaccatccttcttgcttttcttctgttgacatcctgtagca 600
Query: 61 gagtgatacatttattacactcagtgggagctggtttttgaaaataattattgtcttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gagtgatacatttattacactcagtgggagctggtttttgaaaataattattgtcttttt 540
Query: 121 gtaggtgataaaacgaatgataaaatgctgttctttgctgaattgtcatacacaggttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gtaggtgataaaacgaatgataaaatgctgttctttgctgaattgtcatacacaggttag 480
Query: 181 tttgtgatactgtagtattggcttatatttatgtctgttaggcttaatatgtaaattcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttgtgatactgtagtattggcttatatttatgtctgttaggcttaatatgtaaattcat 420
Query: 241 actataaagtagcttttattttatatcataatggctgttagtagcttagcatgtttaaat 300
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 419 actagaaagtagcttttattttatatcataatggctggtagtagcttagcatgtttaaat 360
Query: 301 ttcttaatactttgtagacctgaactagatgcagataggagttagtaaacattgatcatt 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 359 ttcttaatactttgtagacctgaactagatgcaggtaggagttagtaaacattgatcatt 300
Query: 361 gaatttcactggaaaagaaacacttcatgctctcctattatgatgatatgtatactagtc 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 299 gaatttcactggaaaagaaacacttcatgttctcctattatgatgatatgtatactagtc 240
Query: 421 attggggaaatgtaatcagccagggttgtggaagagtta 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 attggggaaatgtaatcagccagggttgtggaagagtta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
