BAC Information

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BAC

Clone NameMSMg01-428M11
Chromosome4 (Build37)
Map Location 140,081,520 - 140,081,638
singlet/doubletsinglet
Overlap geneArhgef10l
Upstream geneC79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
Downstream geneRcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428M11.T7 (MSMg01no428_m11.b1)MSMg01-428M11.TJ (MSMg01no428_m11.g1)
ACCAG521665AG521666
length745796
length of high quality
(start - end)
119 (195 - 313)---
definitionCHROMAT_FILE: MSMg01no428_m11.b1 PHD_FILE: MSMg01no428_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:03 2005CHROMAT_FILE: MSMg01no428_m11.g1 PHD_FILE: MSMg01no428_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTTTCTAAATTTGCGGGGNTATAAGAATCACATTCAAAGAGGATCCGCG
GAATTCCATCTTTCTAGAACCTCTCTCAGAGGCTCAAAGCTCAGCCCTAG
CATTCAATCAAGGTCGTGGCTAAAGAGGTCCGTGCCTCTTTAAATCACCA
TGAACCAGCTGGTCCTGAGAAGCCTGGTCATGGGCCCAGGGATGGATTGC
CCACGAAACACTGGCCCGTGCCCCAACGACACTGCCCCCTCCAATCCTTG
ATGACAGCCACAGGGTGGGCACCATCTTTCACTAGTGTTTAAGACAAAGC
CAGTGTTCCAGGCTTTCCTTTTGTTCAAGAAACAATAGGTGTCCTCGCTC
CGCTGGTTATGTTACAGACTGAGAATTGCGACTCCAGACTGCTGGGCCCA
GTGTGCATAGAGGCCATCTTGTATAAGCTATCATAAAAGTGCTTCATCTG
TCTTAATCTGCTCCGTTCTTATCAGCCCATTTGTGCTATGCTTACCGAAT
TCAATCCTATTTTATCCATCGCTGAGAACATGTGCCTTGTCCCCTCCTCT
ACCCGCTATACCTAGCCCCTAACCTGCAAAGTCTTTTTCGTCCCATTATA
TTTTCCTTCCCTGCTGTAATTCTTATTTATTTTCACCCTGTTTATTCTCT
TTTTTTTCCCCTCCCTCTCTCCCTTTTTTCCTCCCCCTTTTTCGTCTGGC
CCTTTCTTCCCTTCCTCCCTTCTTTTTTTTCCCCCTTTTTTTTTC
CATGACAGGGAGGCAGAGGNCGCCTGTTCGGACCCGAGGNGAANATAGAA
TTACTGCACCGGCCGCACCNNAGGCCGCAAAAGGGAAGGGCCACAGCCCT
GCCCAACCAGGCGCAAAGACGNGAGCAAACGGCNCACGGGCACCAGCCGG
GAGCAGAGAAGACACAAGCGGAACCAACGGGACCCGAACAGACCCGCCAC
AGACCCACCACACACCCCAGCCCAGTTTATGTGCACCAGCCCGAACCGCA
CCCCTCCAGAACACAGAACAGGGACCGGGAGCACAAGCACACCATTTTGT
GCTTTGAAACACACCCCGCCCGCACCACCCGACAAAAGNAATCGCCCCCC
CCCCCGAGCACCAAAAACCCCCCCCACGCCGCCCCCCCAAGAAACCCCCA
CCCAACACAGCAAACGCAAGACCAAACCCCACAAGAAGCCACGAGAAAAC
GGAACCCAACCGGAACAAACAAAAGCACAGAACAAGAGAACAAAGAAGAC
AAAACACCCCACCCCCCACACAAAAAAAAAAAACAAACACCACAAAAAAA
AACAAACCCGCAACCAACCACCCCCCAACCAAAAAAGGAGACAAAAACCC
CCGCACCGCAACCACCGACACAACCCGCAACACACAAAAGACAAACACCC
CCCCAAACCCACAACCAAACTTTTTCCTCCCCTCACAACGACACAAAAAA
AAACCAAACCGAACACAAACACACCCCCCCCCCCACCATATCCGCCCTTA
CATACATCACACAACAACCAACCCCCCCCACCTATATACCCTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_m11.b1 MSMg01no428_m11.b1 CHROMAT_FILE:
MSMg01no428_m11.b1 PHD_FILE: MSMg01no428_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:03 2005
         (119 letters)



>mm_chr4_140081320_140081838
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgcccacgaaacactggcccgtgccccaacgacactgccccctccaatccttgatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 gattgcccacgaaacactggcccgtgccccaacgacactgccccctccaatccttgagga 260

                                                                      
Query: 61  cagccacagggtgggcaccatctttcactagtgtttaagacaaagccagtgttccaggc 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagccacagggtgggcaccatctttcactagtgtttaagacaaagccagtgttccaggc 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)