Query= MSMg01no428_o01.b1 MSMg01no428_o01.b1 CHROMAT_FILE:
MSMg01no428_o01.b1 PHD_FILE: MSMg01no428_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:11 2005
(541 letters)
>mm_chr4_15386177_15387118
Length = 942
Score = 824 bits (426), Expect = 0.0
Identities = 513/542 (94%), Gaps = 7/542 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcatttc-tcgcgatcacattga-ttttaaagtttacacatcatgattttatg 61
|||||||||| ||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 742 ggaattctca-ttcatcatgatcacattgatttttaaagtttacacatcatgattttatg 684
Query: 62 gttttaatcactataattctgggctgtgtggtcgtggctttcccttaggacttactatct 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 683 gttttaatcactataattctgggctgtgtggtcgtggctttctcttaggacttactatct 624
Query: 122 ctgcttagatagatttcattattagttggac-atttttctatcacaagcttttgagggaa 180
| ||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 623 ccacttagatagatttcattattaattgg-ctatttttctatcacaagcttttgagggaa 565
Query: 181 gccaaagttgtggtcacagactcagcagtggggctttgattatatctatgttggagtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccaaagttgtggtcacagactcagcagtggggctttgattatatctatgttggagtcct 505
Query: 241 ccatctgcagatcacagactacatttcattttgggtgagggtctttccatttccaggtt- 299
||||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 504 ccatctgcagatcacaggctacgtttcgttttgggtgagggtctttccatttcca-gttc 446
Query: 300 taaggtctttctgctctgggtgtatctcaggacacagctaagtcttactctgcagtcttc 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaggtctttctgctctgggtgtatctcaggacacagctaagtcttactctgcagtcttc 386
Query: 360 accttgaggtcttcagccctgccacctctgcgagagcctgcttgtcaacactgggcatgg 419
|||||||| |||||||| ||| ||||||||||||| |||| |||||||||||||||||||
Sbjct: 385 accttgagatcttcagctctggcacctctgcgagaacctgtttgtcaacactgggcatgg 326
Query: 420 catgagggacagttccagagctggaagaattacttggtcattgtcacagggcttcggtct 479
||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct: 325 tatgagggacagtttcagagctgaaagagttacttgatcattgtcacagggcttcggtct 266
Query: 480 gttcctaagtggagatatccacatttagtcctatccattgtagcagtgttctgatctcac 539
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gttcctaagtggggatatccacatttagtcctatccattgtagcagtgtactgatctcac 206
Query: 540 tt 541
||
Sbjct: 205 tt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 942
Length adjustment: 10
Effective length of query: 531
Effective length of database: 932
Effective search space: 494892
Effective search space used: 494892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_o01.g1 MSMg01no428_o01.g1 CHROMAT_FILE:
MSMg01no428_o01.g1 PHD_FILE: MSMg01no428_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:11 2005
(465 letters)
>mm_chr4_15218942_15219800
Length = 859
Score = 818 bits (423), Expect = 0.0
Identities = 452/465 (97%), Gaps = 6/465 (1%)
Strand = Plus / Plus
Query: 1 aagaagagaaagtgcagttggagaatagagaaaagataagtgttaagactagaattcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagaagagaaagtgcagttggagaatagagaaaagataagtgttaagactagaattcttt 260
Query: 61 catattaaagtcatctgggaaatcaaatcacttgctatgcctggcccttctttctagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catattaaagtcatctgggaaatcaaatcacttgctatgcctggcccttctttctagcac 320
Query: 121 ctaggtgtgggtgccagccaattttgaagtttactgatgatttaaaacctgctaagaggg 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ctaggtgtgggtgccagccaattttgaagtttactgctgatttaaaacctgcta------ 374
Query: 181 agtgactgaagtttgtttaagcagtgagggaaattgtcatttatattttatgttactata 240
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 375 agtggctgaagtttgtttaagcagtgagggaaattgtcatttacattttatgttactata 434
Query: 241 tgaacttattgggttatgcccttagcttatcttgaagataacagtatagattactggaac 300
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 435 tgaacttactgggttatgcccttagcttatctcgaagataacagtatagattactggaac 494
Query: 301 aatggccaggaaactgtgccataacacagctcatttctgatcattgccaattagctacaa 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 495 aatggccaggaaactgtgccataacacagcttatttctgatcattgccaattagctacaa 554
Query: 361 aagcgatgctacagcagaaaatgttccagcactctgttctttacttgatgaccatttcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aagcgatgctacagcagaaaatgttccagcactctgttctttacttgatgaccatttcct 614
Query: 421 tctaaagggagtcattgttcacgttttattctttaattttaggta 465
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 615 tctaaagggagtcgttgttcacgttttattctttaattttaggta 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 859
Length adjustment: 10
Effective length of query: 455
Effective length of database: 849
Effective search space: 386295
Effective search space used: 386295
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
