Query= MSMg01no428_p17.b1 MSMg01no428_p17.b1 CHROMAT_FILE:
MSMg01no428_p17.b1 PHD_FILE: MSMg01no428_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:19 2005
(416 letters)
>mm_chr4_7167007_7167820
Length = 814
Score = 783 bits (405), Expect = 0.0
Identities = 412/415 (99%), Gaps = 2/415 (0%)
Strand = Plus / Plus
Query: 1 atttattctatgacccaacagttcaaataattgaagtttgctaagtcaacatgttaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttattctatgacccaacagttcaaataattgaagtttgctaagtcaacatgttaaata 260
Query: 61 taaactctcttagcagttctattcaaaacagccaaatgataggaacaaggcaaagttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaactctcttagcagttctattcaaaacagccaaatgataggaacaaggcaaagttcac 320
Query: 121 acatagaagaaaaaaatgaataagatgtgggacatccatagaaaacagaagcattcaatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatagaagaaaaaaatgaataagatgtgggacatccatagaaaacagaagcattcaatc 380
Query: 181 ataacagaatggtatgcttatacctgatagcatgtgggaaagtttgaaaaaccatgccaa 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ataacagaatggtatgcttatacctgatagcacgtgggaaagtttgaaaaaccatgccaa 440
Query: 241 gtaaaatcagctactacacagatcaacctgtgcccctcagtgagcatgaaatttccccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaaatcagctactacacagatcaacctgtgcccctcagtgagcatgaaatttccccca 500
Query: 301 ccagaaaatgctaaaccacagactaggttaacggtttctcttagtagacactgaagagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagaaaatgctaaaccacagactaggttaacggtttctcttagtagacactgaagagca 560
Query: 361 ggaggcaatggcagcttgagggaatggagtttctttggggggggggtgagagaaa 415
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ggaggcaatggcagcttgagggaatggagtttctttgggggggg--tgagagaaa 613
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 814
Length adjustment: 9
Effective length of query: 407
Effective length of database: 805
Effective search space: 327635
Effective search space used: 327635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_p17.g1 MSMg01no428_p17.g1 CHROMAT_FILE:
MSMg01no428_p17.g1 PHD_FILE: MSMg01no428_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:19 2005
(559 letters)
>mm_chr4_7274660_7275616
Length = 957
Score = 1004 bits (519), Expect = 0.0
Identities = 549/561 (97%), Gaps = 6/561 (1%)
Strand = Plus / Minus
Query: 1 tttggc-aatactcagggttgggagaag-aaaataaccactttacatggaagcacatgac 58
|||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 757 tttggcaaatactcaggattgggagaagaaaaataaccactttacatggaagcacatgac 698
Query: 59 acagaggcagagtctccagcagttagttaaatgagggaaggctggcaagattatttgaga 118
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 697 acagaggcagagtctccagc----agttaagtgagggaaggctggcaagattatttgaga 642
Query: 119 gcaagattgtgttttccaagattagcaatgagtttaacaatgaacttctatcaatgctca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gcaagattgtgttttccaagattagcaatgagtttaacaatgaacttctatcaatgctca 582
Query: 179 aagagaagattgtaaactgcctactttgcaaagattcgtttgtcagcactagttgcagcg 238
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 581 aagagaagattgtaaactgcctactttgcaaaggttcgtttgtcagcactagttgcagcg 522
Query: 239 ttgtgctaacattgatgtaaaaccaaagcagtcaccctacaatttagggaatgccaacag 298
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tcgtgctaacaatgatgtaaaaccaaagcagtcaccctacaatttagggaatgccaacag 462
Query: 299 cagccctgcacatcaacaacagggtacaggctctgctaatcaaattcctctctttgtttc 358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 461 cagccctgcacatcaacaacagggtacagtctctgctaatcaaattcctctctttgtttc 402
Query: 359 atcatgaacacatatctaaatttagtgaatgagccaaagactggaacttccaactttgtc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atcatgaacacatatctaaatttagtgaatgagccaaagactggaacttccaactttgtc 342
Query: 419 aaaatgtgatggcaattaagtgacacctcatctttgaagaaatgcatttttcaagtcctt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaatgtgatggcaattaagtgacacctcatctttgaagaaatgcatttttcaagtcctt 282
Query: 479 gacagtaaaaaactatttagattatttacaacatttccaatgagttagtaacctttttta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gacagtaaaaaactatttagattatttacaacatttccaatgagttagtaacctttttta 222
Query: 539 ttacattacattttgcataat 559
|||||||||||||||||||||
Sbjct: 221 ttacattacattttgcataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 957
Length adjustment: 10
Effective length of query: 549
Effective length of database: 947
Effective search space: 519903
Effective search space used: 519903
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
