BAC Information

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BAC

Clone NameMSMg01-429B06
Chromosome4 (Build37)
Map Location 133,085,014 - 133,085,305
singlet/doubletsinglet
Overlap gene1810019J16Rik
Upstream geneAtpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik
Downstream geneNudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429B06.T7 (MSMg01no429_b06.b1)MSMg01-429B06.TJ (MSMg01no429_b06.g1)
ACCAG521892AG521893
length754717
length of high quality
(start - end)
535 (36 - 570)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no429_b06.b1 PHD_FILE: MSMg01no429_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:27 2005CHROMAT_FILE: MSMg01no429_b06.g1 PHD_FILE: MSMg01no429_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTTT
GTAGACCAGGCTGGCCTTGAACTCAGAAACCCACCTGCCTCTGCCTCCCA
AGTGCTGGGATTAAAGGTGTAGGCTATCACTGCTACTGAGCTTAATTAAT
AGCTTTTAAGGGGGTTTTATTTATTATCATGAGTTGTTAGTTCAGGATCA
GAGTGGGGCAATGAATGGATGTTTCAGAAAGCTAAGGCTAGCCCAAAATA
AAGTAACTAGCCTCTAAACCTATAACATTGCAATCTCTCCGCAGTACTGA
AATTCTGAGCATGCTATTAGTCGCTGCAGCCATAGAAACTTCTCCCAGGG
GCTTTTCTTTGCAGCCAGACACTGCCTCTTTTGGGATTTTTTTATTCACA
TAGGTCAGGCAGCTCACAACTATATGTAGCTCCAGCTCCAGAAGATATAA
TGCACACTGGCTTCCGTGGGCACCTGCACACACACACACAGACACACACA
CAGACACACACACACACACACACAGACACAGACACAATTAAAAATATATC
TTTTTAAAAACAAATATAAGTAGTCTTCCCCCTTTTTTTTTTTTTTCTTT
CCAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCTGGAACTCCCTTTGT
TAACCAACCTGTGCTTGAACTCCAAAATCCGCCCCGCTTCTAATAGCCTT
TTTAGAAACCAAACCACACGGGATTTTTTTCGTCTCGGGGGGGGCGCTTT
TTAC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGGTGGCCTCAAAC
TCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGT
GCCACCACTGCCCAGCAGTGTGTATTTTTCTTAAAGACAAGGTCTCTACC
CCATCCTGTCCTGGAACTCTTGAGAGACCTTTTTCCCAGCCTCTGGAATT
CTGAGGAACCCTTGTGACTAGCCAAATCCTTGTGCTTTGGGCCCTTATTA
AGGCCAGACCCGGGAGCTGCTCTGCCAGTTAGTCATAGGGTAGAGGCGTT
TACAGACCCGATTGTTTAAGAGAAGTGCCAGCTGGCTAAGGTGAAGCCCC
ACAAAGCCCAATCCTTCTCCTGTAGCTAGAACTTCCCTACTCAGTTCCAT
CTTACCGTCCTTGTCTTGAGCCAGAGTCCAAGTTTGTTCTCTTGTCCACT
GTCCGGGCCTTATCTTCCCCTCTTCCTTTCAACTTGTTTTGAATCCCCCT
TTCTCAATTCTCGGCTTCTGCCCAATCCGTCTTTTCTCCTTACCCCTATC
TCCCTTACATCCCCCCCCCCCCTTTCCTCTTTTTCTTTCCCATTCTTTTT
TTTTCCCCCTCCCTTTCTTTTCTCTTTTTTACCCCTCTTTTTTATCCTTT
TCCCCCCCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_b06.g1 MSMg01no429_b06.g1 CHROMAT_FILE:
MSMg01no429_b06.g1 PHD_FILE: MSMg01no429_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:27 2005
         (292 letters)



>mm_chr4_133084721_133085412
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccagggtggcctcaaactcagaaatctgcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 actctgtagaccagggtggcctcaaactcagaaatctgcctgcctctgcctcccaagtgc 526

                                                                       
Query: 61  tgggattaaaggcatgtgccaccactgcccagcagtgtgtatttttcttaaagacaaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgggattaaaggcatgtgccaccactgcccagcagtgtgtatttttcttaaagacaaggt 466

                                                                       
Query: 121 ctctaccccatcctgtcctggaactcttgagagacctttttcccagcctctggaattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctctaccccatcctgtcctggaactcttgagagacctttttcccagcctctggaattctg 406

                                                                       
Query: 181 aggaacccttgtgactagccaaatccttgtgctttgggcccttattaaggccagacccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aggaacccttgtgactagccaaatccttgtgctttgggcccttattaaggccagacccgg 346

                                                               
Query: 241 gagctgctctgccagttagtcatagggtagaggcgtttacagacccgattgt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gagctgctctgccagttagtcatagggtagaggcgtttacagacccgattgt 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)