BAC Information

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BAC

Clone NameMSMg01-429C02
Chromosome4 (Build37)
Map Location 67,929,250 - 67,929,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039379, Hmgb1-rs18, LOC433715
Downstream geneTcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429C02.T7 (MSMg01no429_c02.b1)MSMg01-429C02.TJ (MSMg01no429_c02.g1)
ACCAG521932AG521933
length909736
length of high quality
(start - end)
39 (64 - 102)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no429_c02.b1 PHD_FILE: MSMg01no429_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:31 2005CHROMAT_FILE: MSMg01no429_c02.g1 PHD_FILE: MSMg01no429_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCGNCAGGCATCGCGGAATTCTTTT
ACCTTACGCAAGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTA
GAAATCACCTTCAACAAACAAAAAAACCCCACCACAACCCCACCCCCCCT
TCCCCCCCAGGAAGGGGAGAGATACCACCCAAACACCCCACCCGCGCCCC
AATTACCCCACACCTTACAACCCCCACTACCCCCACAAACCGTCTCTTTT
TTTCCCCACCCCCCACCAAAATATAACCCCCCACAAAAAAACACAAACCC
CCACATAAACCAACTACTCCCCACCACTTTTTTTTTTTTTTCAAAACCCC
CTACAACCCCACCTTCACAACAAAACCCCCAATTTTTTTTTCTCCCTCCT
CCACACACAAAGCTATAGCACCCCCCCTCCCAAACCCATTTTAACTCCCC
TTCACCCCAGCCCCACACCAACCAAAACCACCACCATAATACTATCTACT
ACCCACCCCGCCCTTCCAGCTACCCCACCACACCTCAACCCACCACCACC
CCACCCTACCCCACCCCCCCCCACCCACTATAACCCTCCGCCCCCATATA
TACACCATCCCCACCCCCCACCTGTCCCCCCCCCCCCACCCCTCATCCTA
CCATCATTACCCCCCCCCCTACACTCCCCCACTACCTACCAACCACATAC
CCCCCCCTACACAAACACAACCCCCCTCTCCTCCCCCTATACCCCTCCCA
ACAACTCACTACCACCCCCATCCCACACCCTCCCCCCCCCTACAAATCAC
CCCAACCGCCCCACACCACCCAACAACTACCATTAAACAATAAGAACACG
AGTACCACCCCGACCCACAACACCAAACACAACAATCCCCATATCCCCCT
TATCTCACG
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATGAAATAAAAGGACTAAGGTG
TGGGGACAAAGAGGTGACATTGAGCAAGTAAAAATCGGCCAATATAAGCT
CAAGGTTCTTTGTTTAAAAAGAATGTCTATGATACAAAGTTAAACATGAG
TTGCTGAGAAGATTTAAATTAGTCAGTGCATTTGCAAATGTCCTGTGAAA
GTGCTGCAGAAGTGTAAGAAAAATATTTTCCAGACATACTTTATGGGATG
TTGGCATGTCTGATCACCAGGCTATTTTTTAAGGGTCATTTAACAACTCT
CTATTAAGCTGGTCTAAGCTGCCTGTCTAAGAAACATACATTTCCAGCCT
CTTTCTTTTTGTTGCTGGGATGTGATTCAAAGGGATGCCACTCAGAGTCA
TGCCTAAGTAGCATTTAGAGCAAAAGATATTCACAAAATTGTACCACTGA
GATTTTTCTCTCATAGAATTTGTACTTAGAATAACATCTTCCTAGGTTTT
CATGTAGGAACCCGTTTGTCTCTGAATGCCATTATTCTCCCGCCCCGCCG
TATTTGGTCTCCACCCCCCCGCCTTTTTCCTTAATTCCGTGGCCCCCTAT
ATTCTCAACAAAATTGGCACCCTTTTCCCCTTTCCCCCCCTTTTTTCCCC
TCTTAAGCACCTCTTCTTTTATTCTCCCCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_c02.g1 MSMg01no429_c02.g1 CHROMAT_FILE:
MSMg01no429_c02.g1 PHD_FILE: MSMg01no429_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:31 2005
         (246 letters)



>mm_chr4_67929050_67929695
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatgaaataaaaggactaaggtgtggggacaaagaggtgacattgagcaagtaaaaatc 60
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ttatgaaacaaaaggactaaggtgtggggacaaagaggtgatattgagcaagtaaaaatc 260

                                                                       
Query: 61  ggccaatataagctcaaggttctttgtttaaaaagaatgtctatgatacaaagttaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccaatataagctcaaggttctttgtttaaaaagaatgtctatgatacaaagttaaaca 320

                                                                       
Query: 121 tgagttgctgagaagatttaaattagtcagtgcatttgcaaatgtcctgtgaaagtgctg 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tgagttgctgagaagatttaaattagtcagtgcattttcaaatgtcctgtgaaagtgctg 380

                                                                       
Query: 181 cagaagtgtaagaaaaatattttccagacatactttatgggatgttggcatgtctgatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagtgtaagaaaaatattttccagacatactttatgggatgttggcatgtctgatca 440

                 
Query: 241 ccaggc 246
           ||||||
Sbjct: 441 ccaggc 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)