Query= MSMg01no429_c12.b1 MSMg01no429_c12.b1 CHROMAT_FILE:
MSMg01no429_c12.b1 PHD_FILE: MSMg01no429_c12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:33 2005
(635 letters)
>mm_chr4_76002314_76003348
Length = 1035
Score = 1093 bits (565), Expect = 0.0
Identities = 606/627 (96%), Gaps = 13/627 (2%)
Strand = Plus / Plus
Query: 9 ggaaacaagaagcaggagctgatgaagaggccatggagaaatattgcttattggcttgct 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 222 ggaaacaagaagcaggagctgatgaagaggccatggagaaatattgcttattggcttact 281
Query: 69 ctgcctaccttcttatagaaaccaggactaccaggccaggatggcaccactcacaatgag 128
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 282 ctgcctaacttcttatagaaaccaggactaccaggccaggatggcaccactcagaatgag 341
Query: 129 ctgggccatttcccgtatatcactaatttaataaaagactcctgtacagcaaaattttat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ctgggccatttcccgtatatcactaatttaataaaagactcctgtacagcaaaattttat 401
Query: 189 ggaggcattttcttaattaagcttgcctcctatccaatgactctaacttgtgccaagttg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggaggcattttcttaattaagcttgcctcctatccaatgactctaacttgtgccaagttg 461
Query: 249 atataaaactatgttaacacacacacacacacacacacacacacacacacacacaccacc 308
||||||||||||| || | |||||||||||| ||||||||| |||||||
Sbjct: 462 atataaaactatg------------caaaaacacacacacacccacacacac-caccacc 508
Query: 309 accaccaccaccaccaacaacagtaatgatgacaattaaaggaaaaaagaggctatgagt 368
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 accaacaccaccaccaacaacagtaatgatgacaattaaaggaaaaaagaggctatgagt 568
Query: 369 ttgaaagagaacaaggaggggtaaatgagagggtttgaatggaagaaaacgaaaaagaaa 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgaaagagaacaaggaggggtaaatgagagggtttgaatggaagaaaacgaaaaagaaa 628
Query: 429 atgatgtaattgtattataatatcaaaaattaaaaggattaaagaaactgaaatatgccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgatgtaattgtattataatatcaaaaattaaaaggattaaagaaactgaaatatgccc 688
Query: 489 agttaaaaatgaaaaatgatacaaccaccaaatctatattacaatatactgctgcttaca 548
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 689 agttaaaaatgaaaaatgatacaaccaccaaatctatattacaacatactgctgcttaca 748
Query: 549 agactttattatttttctctcactaatggagatttaaaggtaaaatctaagaacttttat 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agactttattatttttctctcactaatggagatttaaaggtaaaatctaagaacttttat 808
Query: 609 taaaaggaaaatgattaaaatattcat 635
|||||||||||||||||||||||||||
Sbjct: 809 taaaaggaaaatgattaaaatattcat 835
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 264 aacacacacacacacacacacacacacacacacacaca 301
||||||||||||||||||||||||||||||||||||||
Sbjct: 52 aacacacacacacacacacacacacacacacacacaca 89
Score = 72.3 bits (37), Expect = 1e-16
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 267 acacacacacacacacacacacacacacacacacaca 303
|||||||||||||||||||||||||||||||||||||
Sbjct: 53 acacacacacacacacacacacacacacacacacaca 89
Score = 70.3 bits (36), Expect = 4e-16
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 265 acacacacacacacacacacacacacacacacacacacac 304
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 47 acacaaacacacacacacacacacacacacacacacacac 86
Score = 70.3 bits (36), Expect = 4e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 269 acacacacacacacacacacacacacacacacacac 304
||||||||||||||||||||||||||||||||||||
Sbjct: 53 acacacacacacacacacacacacacacacacacac 88
Score = 62.6 bits (32), Expect = 9e-14
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 265 acacacacacacacacacacacacacacacacacacacac 304
||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 41 acacagacacaaacacacacacacacacacacacacacac 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_c12.g1 MSMg01no429_c12.g1 CHROMAT_FILE:
MSMg01no429_c12.g1 PHD_FILE: MSMg01no429_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:33 2005
(239 letters)
>mm_chr4_76169878_76170516
Length = 639
Score = 447 bits (231), Expect = e-130
Identities = 237/239 (99%)
Strand = Plus / Minus
Query: 1 agtggatattaaattgacttgcagatacacttccaccttataacccctcttggctactga 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 439 agtggatattaaattgacttgcagatacacttccaccttagaacccctcttggctaatga 380
Query: 61 caatggttgctcttgtttaatactaatattttcaccccatccaaatagttggtcttggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caatggttgctcttgtttaatactaatattttcaccccatccaaatagttggtcttggct 320
Query: 121 gttatgaaactggtattttcttaaaagtaatccaagtcagaggtttagagtctatgaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gttatgaaactggtattttcttaaaagtaatccaagtcagaggtttagagtctatgaaga 260
Query: 181 agatgacggcccggccccaccaaagccttttccctactgcaatgtcaatgttgttggga 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 agatgacggcccggccccaccaaagccttttccctactgcaatgtcaatgttgttggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
