BAC Information

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BAC

Clone NameMSMg01-429F16
Chromosome4 (Build37)
Map Location 155,011,738 - 155,012,331
singlet/doubletsinglet
Overlap geneCdc2l1
Upstream geneLOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik
Downstream geneMmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429F16.T7 (MSMg01no429_f16.b1)MSMg01-429F16.TJ (MSMg01no429_f16.g1)
ACCAG522103AG522104
length743752
length of high quality
(start - end)
597 (36 - 632)380 (73 - 452)
definitionCHROMAT_FILE: MSMg01no429_f16.b1 PHD_FILE: MSMg01no429_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:49 2005CHROMAT_FILE: MSMg01no429_f16.g1 PHD_FILE: MSMg01no429_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGTA
TTTGTTGAGGGTCAAGTTCCGGGGAGTCTTGATAACTGGTCAATTCTGGT
CAATTTAGCTGTTAGCATAGTAGAAGTTATCCCATCTCCAGGGCTATCAG
TTATTCTAGGTTCCAGAGAAGCTTGCAGACAAGGACTAGTCCCCAAACAT
CAAAAACCTATGCTCTCAATGCTATGTGCAGTTCTAGAAGGGACAAAGTA
CCCAAGCTGTTGAGACTGCACCCTACTATGGAGAGGGTGTCCTTTAGAGA
AAACATGAGGGCATAGGGCACTTATGTCCACTTCTGTTTTTCCTTTTCCT
CTTTTAGAAGCTAGATATTTAAGGACATGGACATTAAAGCAATTGTATGC
ACAGGGGAAGCTAGAAAATGACTGCAAGTCCCAGAGAAAGGCAGACTTAG
ATTTGATGTGTAAGAGGATGTGCCAAGCCAACTGTGAGTACAGATAATAC
CGACACTCACAACACAGTCACACCAAGCACTGAAGAGGGGTCTGATCTCA
GAGCCATGACAAACATTTAAGTTAAATAACAAACAAGATCCAGCATGGTG
GCACATGTCTTTAGTCCCAGCACATGAGGCAGAAGCAGAGAGGTAGAGGC
AGGCCTATCTCTGTGACTTGGAGGCCACGTTGATGTACATAGTGAGTTAG
TACTTGGACGGGAAGGTTACATATAGAGACTCTGTCTCAAACN
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTCATGTAGCCCTGGCTGTCCTGGAAC
TTGCTCTGTAAACCAGGCTGGCCTCAACCCCAGAGATCTGCCTGCCGCAG
CCTCCCGAGTGCTGGGATTGAAGGTGTGAGCTGCTGTTGCCTAGTCCTTT
TTATTCTTTTTGTTTCCCCTAAAGATTTTTTAAAATTTTATGTGACTTGG
TGTTTTTTTTTTGCACATATGTCTGTGAAGGGGCTAGATCCCCTGGGATT
GTAGCTGCGTACACTTGTTTGTTGCCATGTGGGTGCAGGCAACTGAACCC
CGGTTCTCTGGGAAAACAGCAGCCTCTTACTTTTAAAAAAAGAATGCTTA
CCTTTACCATCTGTGTATTTGCCAGCGTGTACATATGTGCACCTCGTGGA
TGCCTGCTACCCAGGAAGGCAGAAGATGGTTTCAGACGCCTTGGGACTGG
AGTTGTACATAGACCGTTGTGAACCTTCCCCGGCCTTGCTGGACAGCGAA
CTCTTATCCCCCCCTTTGGAGGCACTGATGTTTTTAATCCTCTGAGCCCC
CTTATTTGGGGCCCTCCCCCCCAGCCTTGGAGCCTTCTGGATCCAGACCC
TGGGTTTGCCTTCTTTACCCTCGGTTAAGGTTTATTCCCCCCTGCCTTCT
TTTTTCGCCTTTTCTGGGAGGATTTGTTCCGACTTCCCCCGCATCTCTTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_f16.b1 MSMg01no429_f16.b1 CHROMAT_FILE:
MSMg01no429_f16.b1 PHD_FILE: MSMg01no429_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:49 2005
         (597 letters)



>mm_chr4_155011432_155012428
          Length = 997

 Score = 1087 bits (562), Expect = 0.0
 Identities = 586/594 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctggtatttgttgagggtcaagttccggggagtcttgataactggtcaattctg 63
           |||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 900 ggaattctggtatcagttgagggtcaagttccggggagtcttgataactgggcaattctg 841

                                                                       
Query: 64  gtcaatttagctgttagcatagtagaagttatcccatctccagggctatcagttattcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 gtcaatttagctgttagcatagtagaagttatcccatctccagggctatcagttattcta 781

                                                                       
Query: 124 ggttccagagaagcttgcagacaaggactagtccccaaacatcaaaaacctatgctctca 183
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 780 ggttccagagaagcttgcagacaaggactagtccccgaacatcaaaaacctatgctctca 721

                                                                       
Query: 184 atgctatgtgcagttctagaagggacaaagtacccaagctgttgagactgcaccctacta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atgctatgtgcagttctagaagggacaaagtacccaagctgttgagactgcaccctacta 661

                                                                       
Query: 244 tggagagggtgtcctttagagaaaacatgagggcatagggcacttatgtccacttctgtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tggagagggtgtcctttagagaaaacatgagggcatagggcacttatgtccacttctgtt 601

                                                                       
Query: 304 tttccttttcctcttttagaagctagatatttaaggacatggacattaaagcaattgtat 363
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 600 tttccttttcctcttttagaagctagatatttaaggacatggatattaaagcaattgtat 541

                                                                       
Query: 364 gcacaggggaagctagaaaatgactgcaagtcccagagaaaggcagacttagatttgatg 423
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 540 gcacaggggaagctagaaaatgactgcaagtcccagggaaaggcagacttagatttgatg 481

                                                                       
Query: 424 tgtaagaggatgtgccaagccaactgtgagtacagataataccgacactcacaacacagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgtaagaggatgtgccaagccaactgtgagtacagataataccgacactcacaacacagt 421

                                                                       
Query: 484 cacaccaagcactgaagaggggtctgatctcagagccatgacaaacatttaagttaaata 543
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cacaccaagcactgaggaggggtctgatctcagagccatgacaaacatttaagttaaata 361

                                                                 
Query: 544 acaaacaagatccagcatggtggcacatgtctttagtcccagcacatgaggcag 597
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 360 acaaacaagatccagcatggtggcacatgcctttagtcccagcacatgaggcag 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)