Query= MSMg01no429_h06.b1 MSMg01no429_h06.b1 CHROMAT_FILE:
MSMg01no429_h06.b1 PHD_FILE: MSMg01no429_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:57 2005
(611 letters)
>mm_chr4_22247101_22248109
Length = 1009
Score = 1035 bits (535), Expect = 0.0
Identities = 589/607 (97%), Gaps = 2/607 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaagggttgggcacaaggaatgcttaagaagcagaacagcaagttttagaaac 63
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatccaaagggtcaggcacaaggaatgcttaagaagcagaacagcaagttttagaaac 263
Query: 64 aaactgaatgtgagctttaagctaaaggaagttgttcatattggtttcaggtcacccgtg 123
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 264 aaactgaatgtgagctttaagctaaaggaagttgttcttattggtttcagatcacccgtg 323
Query: 124 tccgagtctctgggtgaatgatggtatcggtaatcaagacaatttagaaaaggaacaggt 183
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 324 cccgagtctctgggtgaatgatggtatcgctaatcaagacaatttagagaaggaacaggt 383
Query: 184 gttcataggcagatgataattacctttgcacatgttgaattttatgttcaatcaatagta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttcataggcagatgataattacctttgcacatgttgaattttatgttcaatcaatagta 443
Query: 244 tctggaacatttaggaactggttgtatattaaagttcagtggggaggctggagctgggtt 303
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctggaaca-ttaggaaccggctgtatattaaagttcagtggggaggctggagctgggtt 502
Query: 304 tagcattgtggtatgatgagattgtggctagcagattccaaaaactgaagtgagtttgtc 363
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggcattgtggtgtgatgagattgtggctagcagattccaaaaactgaagtgagtttgtc 562
Query: 364 taaagcgggtatttgatgtaagccaggaagagcatccaacaccaaagcctgagaaacatt 423
|||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 563 taaagcgggtgtttgatgtaaaccaggaagagcatccagcaccaaagcctgagaaacatt 622
Query: 424 gatgtttaaagatgctctgtttcagtggaggtactttcattattcctttttcaaaccggg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatgtttaaagatgctctgtttcagtggaggtactttcattattcctttttcaaaccggg 682
Query: 484 tcctctcttctgataaaaaccttcccaggaatacagacttgagccctggagttatcccaa 543
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 683 tcctctcttctgataaaaaccttcccaggaatacagacttgagccctggagtcatcccaa 742
Query: 544 ctctttggcctccttctgtgctcactaaaaattattagtaagtctttttttcaacagntt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 743 ctctttggcctccttctgtgctcactaaaaattattagtaagtctttttttcaacag-tt 801
Query: 604 ttttttt 610
|||||||
Sbjct: 802 ttttttt 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1009
Length adjustment: 10
Effective length of query: 601
Effective length of database: 999
Effective search space: 600399
Effective search space used: 600399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_h06.g1 MSMg01no429_h06.g1 CHROMAT_FILE:
MSMg01no429_h06.g1 PHD_FILE: MSMg01no429_h06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:57 2005
(402 letters)
>mm_chr4_22430299_22431100
Length = 802
Score = 656 bits (339), Expect = 0.0
Identities = 351/355 (98%)
Strand = Plus / Minus
Query: 48 tttccattcataccaaccaccacatgggccaataggactttcttattgttatgacagttg 107
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 802 tttccattcataccaaccaccacatggggcaataggactttcttattgttaggacagttg 743
Query: 108 ggtcagagtgcagtgtcattcattgtagtctttctgatacagagtgacatgtttgatact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggtcagagtgcagtgtcattcattgtagtctttctgatacagagtgacatgtttgatact 683
Query: 168 ataataatactatatgttataataatataatgttatgttatactatatataatgaaatat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ataataatactatatgttataataatataatgttatgttatactatatataatgaaatat 623
Query: 228 aataataaatacagtaatattcaatgctatgaaaatgttaattgtcttgactattatatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aataataaatacagtaatattcaatgctatgaaaatgttaattgtcttgactattatatg 563
Query: 288 ctggacctaaatagtaaaatgtaatcttatacaccataaataattacaacagcctagttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctggacctaaatagtaaaatgtaatcttatacaccataaataattacaacagcctagttt 503
Query: 348 tatacataactttagtataagacaagatgcacatcatacatttgaccttataccc 402
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 tatacataactttaatataagacaagatacacatcatacatttgaccttataccc 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
