MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-430A20
Chromosome	4 (Build37)
Map Location	62,561,639 - 62,561,804
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream gene	Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100039305 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039305
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 62 ESTs, 31 Proteins

name	LOC546832 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:546832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 Proteins

name	OTTMUSG00000007485 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381530 MGI:3651981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mup3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17842 MGI:97235
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039345 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039345
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein

name	OTTMUSG00000000231 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381531 MGI:3650630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp37 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22696 MGI:99181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc31a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20530 MGI:1333844
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fkbp15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338355 MGI:2444782
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 106 ESTs, 1 Protein

name	Slc31a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20529 MGI:1333843
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdc26 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66440 MGI:1913690
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prpf4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70052 MGI:1917302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf183 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76072 MGI:1923322
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr31 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71354 MGI:1918604
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bspry (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192120 MGI:2177191
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdhd3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72748 MGI:1919998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Alad (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17025 MGI:96853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pole3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59001 MGI:1933378
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933430I17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214106 MGI:3045314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rgs3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50780 MGI:1354734
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Zfp618 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72701 MGI:1919950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 54 ESTs, 4 Proteins

name	Ambp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11699 MGI:88002
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16552 MGI:1098232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Col27a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:373864 MGI:2672118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Orm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18405 MGI:97443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Orm-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435786
definition	note : orosomucoid pseudogene pseudo : _no_value

name	Orm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18407 MGI:97445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Orm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18406 MGI:97444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Akna (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100182 MGI:2140340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Whrn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 9 mRNAs

name	Atp6v1g1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66290 MGI:1913540
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	6330416G13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230279 MGI:1913920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC670833 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:670833
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs

name	1700018C11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75524 MGI:1922774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667451 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 23 Proteins pseudo : _no_value

name	Tnfsf15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:326623 MGI:2180140
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfsf8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21949 MGI:88328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rpl17-ps (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435787
definition	gene_synonym : bN312B5.2 note : ribosomal protein L17 (Rpl17) pseudogene pseudo : _no_value

name	LOC100039305 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252565 GeneID:100039305
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 62 ESTs, 31 Proteins product : similar to Predicted gene, OTTMUSG00000007485 transcript_id : XM_001472470.1

name	LOC546832 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252544 GeneID:546832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 31 Proteins product : similar to Predicted gene, OTTMUSG00000007485 transcript_id : XM_621624.4

name	OTTMUSG00000007485 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858560 GeneID:381530 MGI:3651981
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000007485 transcript_id : NM_001012323.1

name	Mup3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88196795 GeneID:17842 MGI:97235
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : major urinary protein 3 transcript_id : NM_001039544.1

name	LOC100039345 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252567 GeneID:100039345
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 1 Protein product : hypothetical protein LOC100039345 transcript_id : XM_001472530.1

name	OTTMUSG00000000231 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57222277 GeneID:381531 MGI:3650630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000000231 transcript_id : NM_001009550.1

name	Zfp37 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123701553 GeneID:22696 MGI:99181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 37 transcript_id : NM_009554.3

name	Slc31a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130373 GeneID:20530 MGI:1333844
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 31, member 2 transcript_id : NM_025286.2

name	Fkbp15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252549 GeneID:338355 MGI:2444782
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 106 ESTs, 1 Protein product : FK506 binding protein 15 transcript_id : XM_485391.5

name	Slc31a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388333 GeneID:20529 MGI:1333843
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 31, member 1 transcript_id : NM_175090.3

name	Cdc26 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363144 GeneID:66440 MGI:1913690
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 26 transcript_id : NM_139291.3

name	Prpf4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872208 GeneID:70052 MGI:1917302
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PRP4 pre-mRNA processing factor 4 homolog (yeast) transcript_id : NM_027297.3

name	Rnf183 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801750 GeneID:76072 MGI:1923322
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 183 transcript_id : NM_153504.3

name	Wdr31 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12963744 GeneID:71354 MGI:1918604
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 31 transcript_id : NM_023597.1

name	Bspry (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:20149729 GeneID:192120 MGI:2177191
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-box and SPRY domain containing transcript_id : NM_138653.1

name	Hdhd3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312203 GeneID:72748 MGI:1919998
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : haloacid dehalogenase-like hydrolase domain containing 3 transcript_id : NM_024257.1

name	Alad (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328484 GeneID:17025 MGI:96853
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aminolevulinate, delta-, dehydratase transcript_id : NM_008525.3

name	Pole3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981173 GeneID:59001 MGI:1933378
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polymerase (DNA directed), epsilon 3 (p17 subunit) transcript_id : NM_021498.2

name	4933430I17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142366749 GeneID:214106 MGI:3045314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933430I17 gene transcript_id : NM_177607.3

name	Rgs3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032316 GeneID:50780 MGI:1354734
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 3 transcript_id : NM_019492.2

name	Rgs3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032320 GeneID:50780 MGI:1354734
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 3 transcript_id : NM_134257.2

name	Rgs3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:126032300 GeneID:50780 MGI:1354734
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 3 transcript_id : NM_001081650.1

name	Zfp618 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149252570 GeneID:72701 MGI:1919950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 54 ESTs, 4 Proteins product : zinc fingerprotein 618 transcript_id : XM_001473196.1

name	Ambp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385932 GeneID:11699 MGI:88002
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alpha 1 microglobulin/bikunin transcript_id : NM_007443.2

name	Kif12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802873 GeneID:16552 MGI:1098232
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 12 transcript_id : NM_010616.2

name	Col27a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116063545 GeneID:373864 MGI:2672118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : procollagen, type XXVII, alpha 1 transcript_id : NM_025685.3

name	Orm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679181 GeneID:18405 MGI:97443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orosomucoid 1 transcript_id : NM_008768.1

name	Orm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62548315 GeneID:18407 MGI:97445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orosomucoid 3 transcript_id : NM_013623.2

name	Orm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181191 GeneID:18406 MGI:97444
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : orosomucoid 2 transcript_id : NM_011016.2

name	Akna (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865876 GeneID:100182 MGI:2140340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AT-hook transcription factor transcript_id : NM_001045514.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526171 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008796.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526166 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008795.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526162 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008794.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526157 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008793.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57012339 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_028640.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57012337 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008791.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57862815 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008792.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526174 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008797.1

name	Whrn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:57526180 GeneID:73750 MGI:2682003
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : whirlin transcript_id : NM_001008798.1

name	Atp6v1g1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:15617196 GeneID:66290 MGI:1913540
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase, H+ transporting, lysosomal V1 subunit G1 transcript_id : NM_024173.1

name	6330416G13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27885006 GeneID:230279 MGI:1913920
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 6330416G13 gene transcript_id : NM_144905.2

name	LOC670833 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252563 GeneID:670833
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 ESTs product : hypothetical LOC670833 transcript_id : XM_001472593.1

name	1700018C11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377569 GeneID:75524 MGI:1922774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700018C11 gene transcript_id : NM_029324.2

name	Tnfsf15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778980 GeneID:326623 MGI:2180140
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor (ligand) superfamily, member 15 transcript_id : NM_177371.2

name	Tnfsf8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802454 GeneID:21949 MGI:88328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor (ligand) superfamily, member 8 transcript_id : NM_009403.3

name	LOC100039305 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252566 GeneID:100039305
definition	codon_start : 1 product : similar to Predicted gene, OTTMUSG00000007485 protein_id : XP_001472520.1

name	LOC546832 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252545 GeneID:546832
definition	codon_start : 1 product : similar to Predicted gene, OTTMUSG00000007485 protein_id : XP_621624.4

name	OTTMUSG00000007485 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858561 CCDS:CCDS18233.1 GeneID:381530 MGI:3651981
definition	codon_start : 1 note : novel member of the major urinary protein (Mup) gene family product : hypothetical protein LOC381530 protein_id : NP_001012323.1

name	Mup3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88196796 CCDS:CCDS18234.1 GeneID:17842 MGI:97235
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : alpha-2u-globulin III; novel member of the major urinary protein (Mup) gene family product : major urinary protein 3 protein_id : NP_001034633.1

name	LOC100039345 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252568 GeneID:100039345
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472580.1

name	OTTMUSG00000000231 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57222278 CCDS:CCDS18235.1 GeneID:381531 MGI:3650630
definition	codon_start : 1 note : bM64F17.3 (putative novel protein) product : major urinary protein protein_id : NP_001009550.1

name	Zfp37 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:123701554 GeneID:22696 MGI:99181
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007281 - germ cell development [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : zinc finger protein 37 homolog product : zinc finger protein 37 protein_id : NP_033580.3

name	Slc31a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384632 CCDS:CCDS18236.1 GeneID:20530 MGI:1333844
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA] GO_process : GO:0006825 - copper ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : solute carrier family 31 (copper transporters), member 2 product : solute carrier family 31, member 2 protein_id : NP_079562.1

name	Fkbp15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252550 GeneID:338355 MGI:2444782
definition	codon_start : 1 product : FK506 binding protein 15 protein_id : XP_485391.4

name	Slc31a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28201980 CCDS:CCDS18237.1 GeneID:20529 MGI:1333843
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0005375 - copper ion transporter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : solute carrier family 31, member 1 protein_id : NP_780299.1

name	Cdc26 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21314828 GeneID:66440 MGI:1913690
definition	GO_component : GO:0005680 - anaphase-promoting complex [Evidence ISS] GO_function : GO:0016853 - isomerase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0051301 - cell division [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 note : CDC26 subunit of anaphase promoting complex product : cell division cycle 26 protein_id : NP_647452.1

name	Prpf4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925589 CCDS:CCDS18239.1 GeneID:70052 MGI:1917302
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA]; GO:0046540 - U4/U6 x U5 tri-snRNP complex [Evidence ISS] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA] [Evidence ISS]; GO:0008380 - RNA splicing [Evidence IEA] codon_start : 1 product : PRP4 pre-mRNA processing factor 4 homolog protein_id : NP_081573.1

name	Rnf183 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23943803 GeneID:76072 MGI:1923322
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : ring finger protein 183 protein_id : NP_705724.1

name	Wdr31 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963745 CCDS:CCDS18240.1 GeneID:71354 MGI:1918604
definition	codon_start : 1 product : spermatid WD-repeat protein protein_id : NP_076086.1

name	Bspry (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20149730 CCDS:CCDS18241.1 GeneID:192120 MGI:2177191
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005499 - vitamin D binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006816 - calcium ion transport [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 function : unknown note : zetin 1 product : B-box and SPRY domain containing protein_id : NP_619594.1

name	Hdhd3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312204 CCDS:CCDS18242.1 GeneID:72748 MGI:1919998
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008967 - phosphoglycolate phosphatase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : haloacid dehalogenase-like hydrolase domain containing 3 protein_id : NP_077219.1

name	Alad (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328485 CCDS:CCDS18243.1 GeneID:17025 MGI:96853
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0042802 - identical protein binding [Evidence IPI]; GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006783 - heme biosynthesis [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0006779 - porphyrin biosynthesis [Evidence IEA] codon_start : 1 note : delta-aminolevulinate dehydratase product : aminolevulinate, delta-, dehydratase protein_id : NP_032551.3

name	Pole3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981174 CCDS:CCDS18244.1 GeneID:59001 MGI:1933378
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : NF-YB-like protein; DNA polymerase epsilon, subunit 3 product : DNA polymerase epsilon subunit 3 protein_id : NP_067473.2

name	4933430I17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243978 CCDS:CCDS18245.1 GeneID:214106 MGI:3045314
definition	codon_start : 1 note : bN189G18.7 (novel protein (4933430I17Rik)) product : hypothetical protein LOC214106 protein_id : NP_808275.1

name	Rgs3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032317 CCDS:CCDS18246.1 GeneID:50780 MGI:1354734
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; C2 membrane binding, PDZ protein/protein interaction, ATP/GTP binding domains product : regulator of G-protein signaling 3 isoform 1 protein_id : NP_062365.2

name	Rgs3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032321 GeneID:50780 MGI:1354734
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; C2 membrane binding, PDZ protein/protein interaction, ATP/GTP binding domains product : regulator of G-protein signaling 3 isoform 2 protein_id : NP_599018.2

name	Rgs3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:126032301 GeneID:50780 MGI:1354734
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence TAS] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0005515 - protein binding [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; C2 membrane binding, PDZ protein/protein interaction, ATP/GTP binding domains product : regulator of G-protein signaling 3 isoform 3 protein_id : NP_001075119.1

name	Zfp618 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149252571 GeneID:72701 MGI:1919950
definition	codon_start : 1 product : zinc finger protein 618 protein_id : XP_001473246.1

name	Ambp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680684 CCDS:CCDS18248.1 GeneID:11699 MGI:88002
definition	GO_component : GO:0005576 - extracellular region [Evidence ISS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0019855 - calcium channel inhibitor activity [Evidence ISS]; GO:0046904 - calcium oxalate binding [Evidence ISS]; GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]; GO:0020037 - heme binding [Evidence ISS]; GO:0019862 - IgA binding [Evidence ISS]; GO:0030568 - plasmin inhibitor activity [Evidence ISS]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]; GO:0030304 - trypsin inhibitor activity [Evidence ISS] GO_process : GO:0030236 - anti-inflammatory response [Evidence ISS]; GO:0007155 - cell adhesion [Evidence ISS]; GO:0042167 - heme catabolism [Evidence ISS]; GO:0050777 - negative regulation of immune response [Evidence ISS]; GO:0046329 - negative regulation of JNK cascade [Evidence ISS]; GO:0007565 - pregnancy [Evidence ISS]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : ulinastatin; Urinary Trypsin Inhibitor; polyprotein product : alpha 1 microglobulin/bikunin protein_id : NP_031469.1

name	Kif12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563262 CCDS:CCDS18249.1 GeneID:16552 MGI:1098232
definition	GO_component : GO:0005871 - kinesin complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA]; GO:0005875 - microtubule associated complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA]; GO:0007017 - microtubule-based process [Evidence IEA] codon_start : 1 note : kinesin 12; N-9 kinesin product : kinesin family member 12 protein_id : NP_034746.1

name	Col27a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116063546 CCDS:CCDS18250.1 GeneID:373864 MGI:2672118
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005581 - collagen [Evidence IEA]; GO:0005737 - cytoplasm [Evidence IEA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005201 - extracellular matrix structural constituent [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : procollagen, type XXVII, alpha 1 protein_id : NP_079961.3

name	Orm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679182 CCDS:CCDS18251.1 GeneID:18405 MGI:97443
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : bM340H1.2 (orosomucoid 1); alpha-1-acid glycoprotein-2 product : orosomucoid 1 protein_id : NP_032794.1

name	Orm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62548316 CCDS:CCDS18252.1 GeneID:18407 MGI:97445
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : orosomucoid 3 protein_id : NP_038651.2

name	Orm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754950 CCDS:CCDS18253.1 GeneID:18406 MGI:97444
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006953 - acute-phase response [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : bM340H1.5 (orosomucoid 2); alpha-1-acid glycoprotein 1 product : orosomucoid 2 protein_id : NP_035146.1

name	Akna (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865877 GeneID:100182 MGI:2140340
definition	codon_start : 1 product : AT-hook transcription factor protein_id : NP_001038979.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526158 CCDS:CCDS18256.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 4 is encoded by transcript variant 4; whirler; scaffold protein product : whirlin isoform 4 protein_id : NP_001008793.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57012340 CCDS:CCDS18257.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; whirler; scaffold protein product : whirlin isoform 1 protein_id : NP_082916.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57012338 CCDS:CCDS18255.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; whirler; scaffold protein product : whirlin isoform 2 protein_id : NP_001008791.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57862816 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; whirler; scaffold protein product : whirlin isoform 3 protein_id : NP_001008792.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526175 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 8 is encoded by transcript variant 8; whirler; scaffold protein product : whirlin isoform 8 protein_id : NP_001008797.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526167 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 6 is encoded by transcript variant 6; whirler; scaffold protein product : whirlin isoform 6 protein_id : NP_001008795.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526163 CCDS:CCDS18258.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 5 is encoded by transcript variant 5; whirler; scaffold protein product : whirlin isoform 5 protein_id : NP_001008794.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526172 CCDS:CCDS18259.1 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 7 is encoded by transcript variant 7; whirler; scaffold protein product : whirlin isoform 7 protein_id : NP_001008796.1

name	Whrn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57526181 GeneID:73750 MGI:2682003
definition	GO_component : GO:0005884 - actin filament [Evidence IDA]; GO:0005929 - cilium [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007605 - sensory perception of sound [Evidence IMP] codon_start : 1 note : isoform 9 is encoded by transcript variant 9; whirler; scaffold protein product : whirlin isoform 9 protein_id : NP_001008798.1

name	Atp6v1g1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:15617197 CCDS:CCDS18260.1 GeneID:66290 MGI:1913540
definition	GO_component : GO:0016471 - hydrogen-translocating V-type ATPase complex [Evidence IPI]; GO:0005622 - intracellular [Evidence IDA]; GO:0005765 - lysosomal membrane [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0016887 - ATPase activity [Evidence IDA]; GO:0015078 - hydrogen ion transporter activity [Evidence IEA]; GO:0008553 - hydrogen-exporting ATPase activity, phosphorylative mechanism [Evidence IDA]; GO:0046933 - hydrogen-transporting ATP synthase activity, rotational mechanism [Evidence IEA]; GO:0046961 - hydrogen-transporting ATPase activity, rotational mechanism [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006754 - ATP biosynthesis [Evidence IEA]; GO:0006811 - ion transport [Evidence IEA]; GO:0015992 - proton transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : lysosomal 13kDa; ATPase, H+ transporting, lysosomal (vacuolar proton pump); ATPase, H+ transporting, lysosomal 13kD, V1 subunit G; ATPase, H+ transporting, V1 subunit G product : vacuolar H+ ATPase G1 protein_id : NP_077135.1

name	6330416G13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27885007 CCDS:CCDS18261.1 GeneID:230279 MGI:1913920
definition	codon_start : 1 product : hypothetical protein LOC230279 protein_id : NP_659154.2

name	LOC670833 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252564 GeneID:670833
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001472643.1

name	1700018C11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55925638 CCDS:CCDS18262.1 GeneID:75524 MGI:1922774
definition	codon_start : 1 note : bM230C2.3 (novel protein (1700018C11Rik)) product : hypothetical protein LOC75524 protein_id : NP_083600.1

name	Tnfsf15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778981 CCDS:CCDS18263.1 GeneID:326623 MGI:2180140
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0007250 - activation of NF-kappaB-inducing kinase [Evidence ISS]; GO:0006919 - caspase activation [Evidence ISS]; GO:0042107 - cytokine metabolism [Evidence ISS]; GO:0006955 - immune response [Evidence IEA] codon_start : 1 note : vascular endothelial growth inhibitor; bM20K13.3 (tumor necrosis factor (ligand) superfamily, member 15) product : tumor necrosis factor (ligand) superfamily, member 15 protein_id : NP_796345.2

name	Tnfsf8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678387 CCDS:CCDS18264.1 GeneID:21949 MGI:88328
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005164 - tumor necrosis factor receptor binding [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA] codon_start : 1 product : tumor necrosis factor (ligand) superfamily, member 8 protein_id : NP_033429.1

name	LOC667451 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252572 GeneID:667451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 23 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_031348.1

clone name	MSMg01-276B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533J13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-352L22
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-482L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-211J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423O02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-320N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-093J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094J05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-135I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-047B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424B03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-016C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068G09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113H15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124H04
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-430A20.T7 (MSMg01no430_a20.b1)	MSMg01-430A20.TJ (MSMg01no430_a20.g1)
ACC	AG522636	AG522637
length	795	879
length of high quality (start - end)	411 (47 - 457)	168 (75 - 242)
definition	CHROMAT_FILE: MSMg01no430_a20.b1 PHD_FILE: MSMg01no430_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:43 2005	CHROMAT_FILE: MSMg01no430_a20.g1 PHD_FILE: MSMg01no430_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:43 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CTTTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCCATGAATTGAGCAGCACTGACCACACTGACTGCCCAAAGTCAAC TGAACTCAACTGCGTTCAGCTAAATTGCACCAAACTGCATCAAACTGAAC TCACCTGAACGACACTCACTGAACTCCTCCCCTCCTGACATTGTGTATTC CTCTTAGGTAGCCTCTCTTTGCTGCCTGTCTTGTGAGAGTTGGGCATATC CTATTTGGCTCATTCTGTCAAAAATCTTTCTCTGATTCGTCACTTTAGGA TTAAAGGTGTGTAATAAAGTTGTGTCTGTATTCCAGCCAGAGGGATTAAA GGTGTGTGGTTTGTCTGCATTCCAGCTGGATCACACAGACCTAGAAGGTC TTTGGATGTGAACCCTTGCCAGAGCAGCCATGTTACTGGATTAAAATTCC TCTACAAGAGCCACATGACACACACTGAAGACATAATACTGCGTCCAAAC ACCAGACATCTGTAACAGCACCCATGCTACATGCATACACAGGACCCCCC AAAACAAGCCACTGTACACGCTCATACACTCCCCATATAAGGCTTGATTT AAATACTTTTTCTGAACACTCCATGGCCCTAGTTCCTCTTCTTATGCATC CGATTAATTTCTCCAACCACTTCATATCATTCCTTTAAATCATTCTCTTC CACATTTCTTTATTTCCCTCCCTCCTCTCATTTTTCCAGTTACCCATTTA CTCCTACGTTTTTTACTGCATATTTCACATAACTCTCTTCATATG	CGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXTGATTTCTTCATGATGGGATTGGTGA TAGAGTCAAGTCATGATCATTAATGTAAGAACCAAGTATCCCTCCAAGGA GGACAAAACTAGAAATAAAAAATAAAGAAGAGATAGGAAGAGAGGGCAAA GAAGGAGGTGGGAGGCAAGTGTGGAGAATAGGGGAAGGAGTCTCCTGCTC TTTTTTTCCAAGTCCTTCTTGCCCCCTTTTTCTTTGCTCTTTTCTCTCTT TCTCATTTTCCCCTCGGATCTTTTTTTTTTTTTTCCTTCCACTTCCTTCC TTTTCTTCTTTCACGTCTTTTTTTTTCCCCCTTCTACGCCGCGCCGCCGC TCATCACATTTCGCATGCTACATCATTTGTCCGTTCCCTTCTGCTCCTTC TTGTCTTTTCCTTCTCCCCCCGTTTTCTTTCCCCTTTACTTCCACTACTT CCTCTTTCTTTATTTTTCACCCCACTTCTTATCCTCCTTTTTCCTCCCTT ATTATACGATCCAAATATCACTTTCCTCCCCCTTTATTCCTCCATTCTAC CTTTCCGCTGTCTCGTCCCTCTTCTCTTCTAACTGTCCTCTGCTTTCATT TAACTGTTCCTCCCATCATATCACCCGCTATTTTTCCACATTCTCTGTTT TTTACCCCTGTCTTTATTACTTCGCCCGTTCTCCCTTCACTCCCGTTCCC CCCTCCCTTTCTTAATTCCTCACCCCCACTCTCCCCTTCATCCGTTTTAT TCATCCCTACCCATCTTACCTCTCACCTCCCCAATTACCCCATTTATCCT CCCTCTCCTACCTTTTTTCCTTACCATTT
quality values	Open. Hide. 7 8 8 8 7 6 6 10 10 14 17 18 18 10 12 9 9 9 12 20 21 16 10 10 12 12 10 10 10 19 22 19 25 11 11 11 9 11 9 11 11 9 9 11 11 15 17 34 34 47 30 30 29 30 31 31 33 28 22 22 12 10 10 10 13 10 10 10 20 22 32 37 29 31 39 31 31 36 47 47 47 35 35 53 53 53 53 59 53 50 53 53 53 53 53 53 68 68 68 51 68 68 68 68 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 44 44 35 43 43 43 43 44 44 59 59 68 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 57 57 68 68 68 68 68 68 59 68 68 59 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 48 48 48 48 48 46 47 43 47 47 59 57 57 43 46 43 46 46 46 43 47 47 57 59 57 43 42 35 32 32 35 32 32 32 32 19 23 29 34 28 35 35 47 40 43 43 43 43 43 43 48 39 39 39 37 37 37 47 59 39 34 25 22 19 16 17 10 11 11 19 21 18 25 22 30 22 28 28 37 39 35 32 32 28 24 24 11 11 11 16 16 23 25 30 30 30 25 28 12 10 10 10 10 17 14 18 23 22 20 18 18 11 16 12 11 11 11 19 20 24 15 15 11 16 14 10 11 8 8 8 9 12 12 28 24 21 18 18 15 13 8 8 8 13 16 20 20 20 19 28 28 27 16 16 11 11 10 9 10 10 11 10 11 11 11 10 10 10 8 8 10 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 10 10 11 16 16 11 11 11 10 13 10 8 8 8 8 10 10 14 15 15 17 17 11 11 11 10 8 8 10 9 12 9 9 9 9 9 8 6 6 6 6 6 8 8 8 6 6 6 8 8 8 6 6 8 10 10 9 9 9 9 9 8 8 8 8 8 8 10 10 9 9 9 9 8 8 10 10 11 11 12 8 6 6 10 8 13 12 11 9 8 8 10 10 8 8 10 6 6 8 8 8 8 8 8 10 8 8 8 8 8 10 10 10 8 10 11 12 12 10 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 19 17 14 11 10 8 10 11 8 8 8 10 10 10 8 10 10 10 11 14 10 10 8 8 8 8 9 10 12 12 11 11 11 11 12 12 12 11 10 11 11 12 11 11 11 15 13 8 8 8 8 8 8 8 8 8 8 6 8 8 9 11 15 10 10 6 6 8 8 8 8 8 7 7 10 6 6 8 10 6 6	Open. Hide. 6 6 8 10 10 10 9 9 10 10 8 8 8 8 13 30 32 43 44 44 30 30 28 24 24 28 39 31 27 17 13 9 9 9 10 10 17 12 17 17 17 22 29 32 31 35 30 32 33 30 33 37 41 50 47 47 44 33 27 9 9 10 10 19 19 37 37 37 28 28 28 28 30 35 42 42 42 43 50 53 53 53 53 50 50 50 53 53 53 68 51 42 42 42 42 51 57 53 50 50 50 68 68 57 50 54 54 54 48 50 54 57 57 57 57 57 48 48 48 57 57 50 50 50 50 51 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 50 50 50 50 50 50 57 68 50 50 50 50 50 57 57 57 57 57 57 57 50 50 50 50 50 48 59 57 57 57 57 54 54 54 59 59 57 57 50 50 50 50 50 50 57 57 57 57 57 57 57 57 57 57 54 54 54 54 57 57 54 57 57 57 57 57 57 48 42 42 42 48 48 54 54 54 48 59 59 48 48 48 57 47 50 47 47 47 47 48 48 48 37 31 19 12 11 11 11 11 11 14 13 15 9 9 8 8 8 9 13 13 8 8 8 8 9 9 8 8 6 6 8 6 10 9 8 8 8 8 8 8 11 14 16 18 18 12 13 12 13 17 10 9 9 10 13 15 16 11 12 11 10 10 10 8 8 12 11 13 12 10 8 8 8 8 8 8 9 11 9 9 10 9 9 8 8 12 9 11 17 18 18 28 28 28 29 32 26 22 18 11 8 8 8 10 8 8 8 8 8 8 8 8 8 14 13 12 8 11 10 10 11 13 15 16 16 9 9 9 8 8 8 8 8 8 11 11 8 10 8 10 8 9 10 10 10 12 15 15 10 9 9 8 9 9 10 8 8 12 19 10 12 8 8 8 8 8 6 6 6 6 6 6 8 8 12 10 10 11 11 8 8 8 8 8 6 9 9 9 10 10 12 10 8 8 8 8 6 6 6 6 8 8 12 10 8 12 12 8 6 6 6 8 8 9 9 10 10 8 8 8 8 8 11 10 13 16 18 13 11 11 11 12 11 16 12 10 8 8 8 8 8 12 15 11 10 10 10 10 8 8 11 12 10 10 9 10 10 10 8 6 6 8 8 6 6 11 8 8 8 8 8 10 10 20 15 8 8 8 8 11 8 8 8 8 8 8 6 6 6 8 8 8 10 12 10 10 10 10 13 13 12 10 10 10 10 12 11 11 12 13 9 11 11 11 13 9 9 9 9 9 8 9 9 9 9 10 12 11 10 8 8 8 11 15 8 9 9 6 7 8 8 8 8 10 10 10 14 9 11 12 10 10 8 12 10 9 9 9 8 10 10 13 11 12 8 8 8 8 12 12 12 9 9 10 8 8 8 8 6 6 8 8 8 9 9 9 10 10 8 8 8 6 7 10 8 7 7 8 8 9 12 14 19 15 13 8 8 8 8 10 11 9 9 9 8 8 8 8 10 8 6 6 6 8 9 9 9 9 13 10 11 11 10 8 8 6 6 6 8 10 11 9 9 8 10 6 6 8 10 15 10 10 8 9 9 8 8 7 7 10 8 8 8 10 10 19 21 10 10 10 10 15 12 12 12 12 12 12 13 8 8 6 6 6 6 9 15 18 15 12 14 16 11 11 11 9 9 9 9 9 8 8 8 8 6 6 13 12 12 9 9 9 9 13 13 8 9 9 10 10 19 14 16 16 14 14 15 19 21 19 18 11 8 8 6 7 8 8 8 8 8 7 7 6 6 8 8 10 10 10 11 14 16 10 6 6 6 7 6 6 8 8 10 10 8 8 8 8 8 8 8 13 15 12 10 10 10 10 9 16 14 12 9 9 9 9 8 8 8 8 8 8 9 9 10 14 12 12 12 12 12 12 12 14 21 10 8 8 12 8 6 8 10 10 12 15 8 8 8 8 10 10 8 10 8 8 8 8 10 10 9 9 8 8 10 8 12 9 9 9 9 7 7 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no430_a20.g1 MSMg01no430_a20.g1 CHROMAT_FILE:
MSMg01no430_a20.g1 PHD_FILE: MSMg01no430_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:43 2005
         (168 letters)



>mm_chr4_62561439_62562006
          Length = 568

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatttcttcatgatgggattggtgatagagtcaagtcatgatcattaatgtaagaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgatttcttcatgatgggattggtgatagagtcaagtcatgatcattaatgtaagaacca 307

                                                                       
Query: 61  agtatccctccaaggaggacaaaactagaaataaaaaataaagaagagataggaagagag 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agtatccctccaaggagaacaaaactagaaataaaaaataaagaagagataggaagagag 247

                                                         
Query: 121 ggcaaagaaggaggtgggaggcaagtgtggagaataggggaaggag 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ggcaaagaaggaggtgggaggcaagtgtggagaataggggaaggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information