BAC Information

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BAC

Clone NameMSMg01-430E15
Chromosome4 (Build37)
Map Location 70,266,904 - 70,424,123
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430E15.T7 (MSMg01no430_e15.b1)MSMg01-430E15.TJ (MSMg01no430_e15.g1)
ACCAG522818AG522819
length768766
length of high quality
(start - end)		355 (71 - 425)405 (78 - 482)
definitionCHROMAT_FILE: MSMg01no430_e15.b1 PHD_FILE: MSMg01no430_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:04 2005CHROMAT_FILE: MSMg01no430_e15.g1 PHD_FILE: MSMg01no430_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,266,904 - 70,267,255)(70,423,783 - 70,424,123)
sequence
CTTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCATTGATATTCTCGTACAGCAGTGTACACAATTTACTATAGTATA
GAAGTGCACTTGAATATAGTCATACAGCAATATTCATGGTTGTAATAGTT
AAGATGGTTGCATGAATTTAATAGTGGAATAATGACAAGGGACACACTCA
TAGAGCTTCACACATGCACGCACTATTAAACTCTATAAACAGATGTTCTC
TTATAGAGGCACATAGAAATTTCCTGTCATAGCAGGACATAATGGATGTA
CTAGTAAACCAACACTAATGGAATTACTAGATAGGAGCACACAAGTACAG
CACCGAACATGCATGCAATAGTATTGAGCATACAGGTATCTCTTTCTAAT
GTACTTCATATCATTGTCTTAGTCAAAAAGGAAATCCTACTAATGCATTG
CAAATCTTCGAACATTACCTAATGCTACACAACATAACGTTTCTGTGGGC
ACATCCTATTCTACAACTTCATGTTCAGGCTATTTACTATTACTTCATTT
CTCTTTTTATGTCTCACCATTTTTTTGAATTTTACTGTTCTTGTTCTTTT
CCCCACCTCCTTTTCCCTTTTTTCCTCTTTTATCCACCCTCACCCTTTAT
TCCACTGATTTTCCTTTTCCTTTCTTTTTCTTCTTTTCCCTTTTTCCTCC
TTTTTCTCCCTTCCTCTCTTGTCTCCTTTTTTTCCCCCCTCTTTTTCTCG
TTACCTCTCCTTCTTCCT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTACTACAAGAACACAGGAAA
AAGAAATGTATTTGATGATGGGAATGGCCAAGAAAAGTGTGCTAGGAAGG
AATCCACTGCCTTGAGCTAATTTAAGACAGTAAATTAGCTAATCACCTAT
CCTAATAAGAAAGAAATTAAAGAAAACCACATTTCTTCAAATAACTAAAT
AAATAGCAGGAATCAGTAACACATCACAATAATAACTTGAAATGTAAATG
ATCTCAACTCACCAATTTAAAAAATATATAGATTATCTGACTGGATTTAA
AAACTGGATTTAATATTCTGTTGTCTCCAGGGAACTCGTGTGACTGACAA
AAGCATCCACTGATTTAAAATCAAATAATACTTACCTTACTCAAGATGAT
ATCTTCTAGTTCCATTTATTTGCCTAAGAATTTCATAAATTCATTGATTT
TAATAGCTGCTTAGTACTCCATTGTGTAAATGTACCACATTTTCTGCATC
CATTCCTCTGTTAAGGGAAATCTGTTTTTTGTTTTTTTCCCACCCTGGCC
CCACAAATAAAGTGGTTTTAAACCTAGCGCTCGTAGTGCTCCTTCCCATT
CTGCGTACTTTTTGTGTTTTGTCCTCGTGCCTTAATGTTGGTTTATACCC
CCTTCCCTGCTCTCTTTTCTCTAACTCCTTGTGCTCTTTTAATTACCACT
TAACCCTTCCCCTCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_e15.b1 MSMg01no430_e15.b1 CHROMAT_FILE:
MSMg01no430_e15.b1 PHD_FILE: MSMg01no430_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:04 2005
         (355 letters)



>mm_chr4_70266704_70267458
          Length = 755

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagcagtgtacacaatttactatagtatagaagtgcacttgaatatagtcatacagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagcagtgtacacaatttactatagtatagaagtgcacttgaatatagtcatacagcaa 260

                                                                       
Query: 61  tattcatggttgtaatagttaagatggttgcatgaatttaatagtggaataatgacaagg 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 tattcatggttgtaatagttaagatggttgtatgaatttaatagtggaataatgacaagg 320

                                                                       
Query: 121 gacacactcatagagcttcacacatgcacgcactattaaactctataaacagatgttctc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 gacacactcatagagcttcacacatgcatgcactattaaactctataaacagatgttctc 380

                                                                       
Query: 181 ttatagaggcacatagaaatttcctgtcatagcaggacataatggatgtactagtaaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatagaggcacatagaaatttcctgtcatagcaggacataatggatgtactagtaaacc 440

                                                                       
Query: 241 aacactaatggaattactagataggagcacacaagtacagcaccgaacatgcatgcaata 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacactaatggaagtactagataggagcacacaagtacagcaccgaacatgcatgcaata 500

                                                               
Query: 301 gtattgagcatacaggtatctctttctaatgtacttcatatcattgtcttag 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtattgagcatacaggtatctctttctaatgtacttcatatcattgtcttag 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no430_e15.g1 MSMg01no430_e15.g1 CHROMAT_FILE:
MSMg01no430_e15.g1 PHD_FILE: MSMg01no430_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:04 2005
         (405 letters)



>mm_chr4_70423783_70424587
          Length = 805

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttactacaagaacacaggaaaaagaaatgtatttgatgatgggaatggccaagaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tcttactacaagaacacaggaaaaagaaatgtatttgatgatgggaatggccaagaaaag 282

                                                                       
Query: 61  tgtgctaggaaggaatccactgccttgagctaatttaagacagtaaattagctaatcacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtgctaggaaggaatccactgccttgagctaatttaagacagtaaattagctaatcacc 222

                                                                       
Query: 121 tatcctaataagaaagaaattaaagaaaaccacatttcttcaaataactaaataaatagc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tatcctaataataaagaaattaaagaaaaccacatttcttcaaataactaaataaatagc 162

                                                                       
Query: 181 aggaatcagtaacacatcacaataataacttgaaatgtaaatgatctcaactcaccaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aggaatcagtaacacatcacaataataacttgaaatgtaaatgatctcaactcaccaatt 102

                                                                       
Query: 241 taaaaaatatatagattatctgactggatttaaaaactggatttaatattctgttgtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 taaaaaatatatagattatctgactggatttaaaaactggatttaatattctgttgtctc 42

                                                    
Query: 301 cagggaactcgtgtgactgacaaaagcatccactgatttaa 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  cagggaactcgtgtgactgacaaaagcatccactgatttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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