BAC Information

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BAC

Clone NameMSMg01-431B13
Chromosome4 (Build37)
Map Location 132,791,539 - 132,791,981
singlet/doubletsinglet
Overlap genenone
Upstream geneGmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2
Downstream geneFcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431B13.T7 (MSMg01no431_b13.b1)MSMg01-431B13.TJ (MSMg01no431_b13.g1)
ACCAG523434AG523435
length761785
length of high quality
(start - end)		443 (120 - 562)328 (119 - 446)
definitionCHROMAT_FILE: MSMg01no431_b13.b1 PHD_FILE: MSMg01no431_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:15 2005CHROMAT_FILE: MSMg01no431_b13.g1 PHD_FILE: MSMg01no431_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCTCCC
TACCTTGCAAGATACTGGAAATTGTCATTCCCATGCCAGAACGCAGACTC
CTGACTCCCCACTGCTCTGTAGCAGTCAGGAGTGGAAGAAGTCCACCCCT
GCACCTGCTGCCAATCCAAACTGGCCTGGGGCAGGGGAAGCCAGGGAAGT
GCAGCTAGGGGCTGGATGGGTGTGAGGGCTGGCTGGACCCTTCCCTTCTC
TTTGCATTGTGGGGAGGGGGCTTACGGCTCAAATGTGACTCCTCTGAGTG
AGTTTAGCCTATGATTATTGAATGATAAATCCAGTTTCTTCATTAACTTT
TGTTGACACTCAACTCATGACAAAAATCTCGTAAGCTCCAGGGAAGATTG
GAATGAATATATATATATATATATACTGTCGCCAGTTACCCATTTAATTT
GCAGGTTAAGAACCCAGGTATTAGGGACTGGCGAAATGGCTCAGTGGGTA
AGAGCACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAGTTCAAATCCCAG
CAACCACATGGTGGCTTACAACCACCCGTAGTGAGATCTGATGCCCTCCT
TCTGGCGCTGAAGACAGCTACAGTGGACTTATGGATTATAATAAAAAACC
CTTGGACTGAAGCACGGAGGACTGGGTGGACAAAAATAACTGAGAACCCG
AGGAGTAAGGTTACCTGTACCAAAAAAGTTCACTTCCTTACCCACATGAA
GGTTCCCAACT

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTGCCGAAAACCCTATCCCTCATAGCCATGATGC
GTAGTGGTGTATAGCTAAAACCTTGAAACAAGAAACATCTCAAGACATAA
TTCAATAGTTGAATGGCTATAGAAAATAGGTTATAACTATTCAATGGGAT
AATACTCTGATGTTTAAAACAGGAAATAATGAATTCACAAGTAAAATGAT
GGAGCTAGGAAGAAAATCCTAAGTGATAAATCTGGATTCAAAATGGCAGA
TGTGGTATGTATTCACTTGCATGTGGCTGTTAAGTCTTCAATAAGCAGAC
TACAATCCACATAACCAGATAGCTTGGGTATAGGGTAAATGATTAGAGTG
AAAGGATTGAACATTTATAAGAAGGGGTAATAGTTATGGATGGCTGNGTA
NAACTGGAACTANAGTACCNGATGCACAGAGCGATTCTTTGATTGGCCGA
TACTACCTAAATTTTTATCTTTTTTCCCCCTTTTTTCTTCTTTTTTTCTC
TCCCTCTTTCCCCTCTTTCACTTTTTTTCTCTTTCCCCTTTTCCCCCTAC
CCCCCATTCCCCCTTTTTCCTCTCGTTCTCCATCCACCACTATTTCCACT
TTTTCTTATTTTTCCCTTTATCTGTTCCCACTTAATTCCATCATTTTCAT
TTCTTCTATACAGCCCTTTTATTTTTCCTTTTAACCTCGCTTTTATTTTT
TTTCTCCCTCCCCTCTTTTCTCTCTCTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_b13.b1 MSMg01no431_b13.b1 CHROMAT_FILE:
MSMg01no431_b13.b1 PHD_FILE: MSMg01no431_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:15 2005
         (443 letters)



>mm_chr4_132791428_132792270
          Length = 843

 Score =  841 bits (435), Expect = 0.0
 Identities = 441/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcagtcaggagtggaagaagtccacccctgcacctgctgccaatccaaactggcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tagcagtcaggagtggaagaagtccacccctgcacctgctgccaatccaaactggcctgg 495

                                                                       
Query: 61  ggcaggggaagccagggaagtgcagctaggggctggatgggtgtgagggctggctggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggcaggggaagccagggaagtgcagctaggggctggatgggtgtgagggctggctggacc 435

                                                                       
Query: 121 cttcccttctctttgcattgtggggagggggcttacggctcaaatgtgactcctctgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cttcccttctctttgcattgtggggagggggcttacggctcaaatgtgactcctctgagt 375

                                                                       
Query: 181 gagtttagcctatgattattgaatgataaatccagtttcttcattaacttttgttgacac 240
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gagtttagcctatgaataatgaatgataaatccagtttcttcattaacttttgttgacac 315

                                                                       
Query: 241 tcaactcatgacaaaaatctcgtaagctccagggaagattggaatgaatatatatatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcaactcatgacaaaaatctcgtaagctccagggaagattggaatgaatatatatatata 255

                                                                       
Query: 301 tatatactgtcgccagttacccatttaatttgcaggttaagaacccaggtattagggact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tatatactgtcgccagttacccatttaatttgcaggttaagaacccaggtattagggact 195

                                                                       
Query: 361 ggcgaaatggctcagtgggtaagagcactgactgctcttctgaaggtcctgagttcaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ggcgaaatggctcagtgggtaagagcactgactgctcttctgaaggtcctgagttcaagt 135

                                  
Query: 421 tcaaatcccagcaaccacatggt 443
           |||||||||||||||||||||||
Sbjct: 134 tcaaatcccagcaaccacatggt 112


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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