BAC Information

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BAC

Clone NameMSMg01-431C10
Chromosome4 (Build37)
Map Location 54,860,155 - 55,022,412
singlet/doubletdoublet
Overlap geneLOC384018, EG666920, Zfp462
Upstream geneTmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431C10.T7 (MSMg01no431_c10.b1)MSMg01-431C10.TJ (MSMg01no431_c10.g1)
ACCAG523476AG523477
length762769
length of high quality
(start - end)		455 (66 - 520)245 (67 - 311)
definitionCHROMAT_FILE: MSMg01no431_c10.b1 PHD_FILE: MSMg01no431_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:20 2005CHROMAT_FILE: MSMg01no431_c10.g1 PHD_FILE: MSMg01no431_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,860,155 - 54,860,608)(55,022,168 - 55,022,412)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCATCCGCGGAATTCT
CCAGAATTAACAAAATAAAAATGAACAGAGTGGGCACTAATTTTATCTTA
TCTACTTAAGCACTTATAATATTTGCTACTAGGCTTTTGATATATCTGTT
ATTGTGTTTAGAAATGTTTTTCTTGTGATAAGCAAATAGAAAAATTAATG
AAACCCCCAAGCAATGATAAACCACAAGGAAATCAAAAATTTCATGTGAA
AAAATTCTATACTACCTGATTGGTCTGTGAACTATCTATGGACTTGTAAC
AGTGTCTCTCTGCCTTTTTACTTGACACCAGATTGTTATGTAATCCTATC
AGGAGCCAAGAAGATTAAAAGGGGAAGACATGAAGCCGAGCAGTGGTGGC
GCATGCCTTTAATCCCAGTACTTGGGGGGGCAGAGGCAGGTGGATTTCTG
AGTCTGAGGGCAACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT
ACAAAGAAAAACCCTGTCTNCTATTACAAACACATTATCTTAAGAAAGAA
CGAATGAAAGAAAGAAATAATGAAAGAAAGAAAGAAAGAAAGAACGAATG
GGTAAGAAAAGATTATGATCATGATTAAATAACAGCGGAAGACCTGGGAG
AAGACTTTTGTATCACCAACAATAAAATTACCTATATTTTGTTGTAACCT
TTTCTAAACCCCCCCCCAAAATCGTTTTAATTCCCCCCCCAGTTCCCTTT
TAAAAAAAAAAN

TGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGTATCCCAATCCGACGTACCCGTGTGACACT
GTTTATGAGCCCCGAGTTTTAATGAGCTCTTACAAGTAAACGGACACTCG
TCACATTTGTAGACAGCGGTCTTTCCAGATAAGTGGATATTTTCTATGTG
GCGGGAAATGCTACGGCGGTGCATGGTGAGGAAAGGACAAAAGGGACTCT
GGAATCTATTCATGAACCTTCGAAATGGAATCCCCTTGGTCTCTAACAGC
TTGTTGCCATCTTATTCTTGAGCTGCTCTGCAGACAGTCCTGACGCCTGG
TGATCCAGAACACTTAAACCATTCTCACTGTCTACCTCATTTAAGTCCTC
ATCAGAGCTAGAGTCATTTAGCATGCTGTTAGTGTCCAGGTCAGCAGATG
AATTCGTCATGTCAGACATTCCGTAACGGGACCTCTCCGTCAAGTTCACA
AGGCCAGAATTATGAGGCGACTTCGGCTTCATCTGAGGGTAAGACATTTA
ATAATACACCTCGGAAGTCTGAAGAAGAATTACGCCTCATGATTGTTGTT
GCCCATGGACCTCTCTGTAAATGGTAGTACTTTTCTGCTGCGCCCTCTAC
CCTTTTTTTTTATAATCCTTGGGATTGATTAACCCCCATCCTTCTTCGCT
TTTTTCCTCCTTCTCTTCTCCCGTTCTTCCTTTCTCCTCTTCCTATTTCT
CTTCTCTCCCTTTTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_c10.b1 MSMg01no431_c10.b1 CHROMAT_FILE:
MSMg01no431_c10.b1 PHD_FILE: MSMg01no431_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:20 2005
         (455 letters)



>mm_chr4_54859955_54860809
          Length = 855

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaatgaacagagtgggcactaattttatcttatctacttaagcacttataatatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaaaatgaacagagtgggcactaattttatcttatctacttaagcacttataatatttg 260

                                                                       
Query: 61  ctactaggcttttgatatatctgttattgtgtttagaaatgtttttcttgtgataagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctactaggcttttgatatatctgttattgtgtttagaaatgtttttcttgtgataagcaa 320

                                                                       
Query: 121 atagaaaaattaatgaaacccccaagcaatgataaaccacaaggaaatcaaaaatttcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagaaaaattaatgaaacccccaagcaatgataaaccacaaggaaatcaaaaatttcat 380

                                                                       
Query: 181 gtgaaaaaattctatactacctgattggtctgtgaactatctatggacttgtaacagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaaaaaattctatactacctgattggtctgtgaactatctatggacttgtaacagtgt 440

                                                                       
Query: 241 ctctctgcctttttacttgacaccagattgttatgtaatcctatcaggagccaagaagat 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctctgcctttggacttgacaccagattgttatgtaatcctatcaggagccaagaagat 500

                                                                       
Query: 301 taaaaggggaagacatgaagccgagcagtggtggcgcatgcctttaatcccagtacttgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaaggggaagacatgaagccgagcagtggtggcgcatgcctttaatcccagtacttgg 560

                                                                       
Query: 361 gggggcagaggcaggtggatttctgagtctgagggcaacctggtctacagagtgagttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggggcagaggcaggtggatttctgagtctgagggcaacctggtctacagagtgagttcc 620

                                             
Query: 421 aggacagccagggctacaaagaaaaaccctgtct 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 aggacagccagggctacaaagaaaaaccctgtct 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_c10.g1 MSMg01no431_c10.g1 CHROMAT_FILE:
MSMg01no431_c10.g1 PHD_FILE: MSMg01no431_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:20 2005
         (245 letters)



>mm_chr4_55021968_55022612
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtatcccaatccgacgtacccgtgtgacactgtttatgagccccgagttttaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acagtatcccaatccgacgtacccgtgtgacactgtttatgagccccgagttttaatgag 386

                                                                       
Query: 61  ctcttacaagtaaacggacactcgtcacatttgtagacagcggtctttccagataagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcttacaagtaaacggacactcgtcacatttgtagacagcggtctttccagataagtgg 326

                                                                       
Query: 121 atattttctatgtggcgggaaatgctacggcggtgcatggtgaggaaaggacaaaaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atattttctatgtggcgggaaatgctacggcggtgcatggtgaggaaaggacaaaaggga 266

                                                                       
Query: 181 ctctggaatctattcatgaaccttcgaaatggaatccccttggtctctaacagcttgttg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactggaatctattcatgaaccttcgaaatggaatccccttggtctctaacagcttgttg 206

                
Query: 241 ccatc 245
           |||||
Sbjct: 205 ccatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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