Query= MSMg01no432_a19.b1 MSMg01no432_a19.b1 CHROMAT_FILE:
MSMg01no432_a19.b1 PHD_FILE: MSMg01no432_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:37 2005
(429 letters)
>mm_chr4_122172622_122173450
Length = 829
Score = 729 bits (377), Expect = 0.0
Identities = 416/429 (96%)
Strand = Plus / Minus
Query: 1 atagagccttcacgggaccaagggcctctcctcccttgatgacagacaaggccatcctct 60
||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 774 atagagccttcacaggaccaagggcctctactcccttgatgacagacaaggccatcatct 715
Query: 61 gttacatatgcagctggagccatgagtcccatcatgtgtactttgaggttggtgatttat 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 714 gttacatatgcagctggagccatgagtcccaccatgtgtactttgaggttggtgatttat 655
Query: 121 tccctgggagctctggggtgtgtgtcatcctgacaggccttccttcactacttccttcct 180
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 654 tccctgggagctctggggtgtgtgccatcctgactggccttccttcactacttccttcct 595
Query: 181 tataaaaccagtgtagcaggatcccactgtaccatgaatacatctttcttgcatattcgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 594 tataaaaccagtgtagcaggatcccactgtaccatgaatacatctttcttgcagattcgc 535
Query: 241 ttaaatattttcaagaaaaaatgtgattaggtaactaacacaatgactctagaatgagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 534 ttaaatattttcaagaaaaaatgtgattaggtaactaacacaatgactctagaataagag 475
Query: 301 aatatggccacaaaacacacaatgtaataaggagagaaagcatgggggataagagttggt 360
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| || |||
Sbjct: 474 aatatggccacaaaacacacaatgtaataaggagggaaagcatgggggacaagtgtcggt 415
Query: 361 ggctgtaaaccagattgtagtgtgcttaggaagtagccatctctccatgtgtctctgcta 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 414 ggctgtaaaccagattgtagtgtgcttaggaagtagccatctctccacgtgtctctgcta 355
Query: 421 cactcaaga 429
|||||||||
Sbjct: 354 cactcaaga 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no432_a19.g1 MSMg01no432_a19.g1 CHROMAT_FILE:
MSMg01no432_a19.g1 PHD_FILE: MSMg01no432_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:37 2005
(404 letters)
>mm_chr4_121193656_121194459
Length = 804
Score = 611 bits (316), Expect = e-179
Identities = 382/404 (94%), Gaps = 2/404 (0%)
Strand = Plus / Plus
Query: 2 tatagagagctctcctatagagagattgtgtctcaaaaaga-caaaaccaaaaccaaagc 60
|||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 202 tatagagagctctcttatagagagattgtgtctcaaaaa-accaaaaccaaaaccaaagc 260
Query: 61 caaaatcaaaagcaagcaagcaagcaagcaaccaaccaaacaacaaattatgggctgggc 120
||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| |||||
Sbjct: 261 caaaatcaaaagcaaccaaccaaccaaccaaccaaccaaacaacaaattatgggttgggc 320
Query: 121 attgtggtccaggcctataatcccagaactttctaggcagactcaggaggagtaagagtt 180
|||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||
Sbjct: 321 attgtggtccaggcctataatcccagaactttgttggaagactcaggaggagtaggagtt 380
Query: 181 caaggtcatccacagatacattgagagatctagacatcctgggctactgagacctactgg 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 caaggtcatccacagatacattgagagatctagacaacctgggctactgagacctactgg 440
Query: 241 gtatctctctagattcctttctaccttttgtctttgatagaggctcccaggaaacctaga 300
|||||||||||||| ||||||||||||||||||| | |||||||||||| |||||||||
Sbjct: 441 gtatctctctagatccctttctaccttttgtcttcaacagaggctcccagtaaacctaga 500
Query: 301 acttggtaacttggttacactgtctgtgcagtaatctccatagatcaccttgttctacat 360
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 501 acttggtaacttgattacactgtctgtgcagcaatctccatagatcgccttgttctacat 560
Query: 361 cctctgcactgggataacaggtttatatctatagatccatgcat 404
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 cctctgcattgggataacaggtttatatctatagatccatgcat 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
