BAC Information

Click to search

BAC

Clone NameMSMg01-432P15
Chromosome4 (Build37)
Map Location 102,245,846 - 102,246,271
singlet/doubletsinglet
Overlap genePde4b
Upstream geneDnajc6, Leprot, Lepr, B020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739
Downstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432P15.T7 (MSMg01no432_p15.b1)MSMg01-432P15.TJ (MSMg01no432_p15.g1)
ACCAG524867AG524868
length795856
length of high quality
(start - end)
430 (42 - 471)58 (64 - 121)
definitionCHROMAT_FILE: MSMg01no432_p15.b1 PHD_FILE: MSMg01no432_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:55 2005CHROMAT_FILE: MSMg01no432_p15.g1 PHD_FILE: MSMg01no432_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGAGCTGACAGGGAGCATAAATGTAACGCCTTACAGAGGGTGGAAGAC
TGCGAAGAAGACCTTTGGAACTGGAGGCGCATGGTTCCAATTCTGCCAGT
CTCACTTGCTAGTCTTTTTACTCAACTGCCCAGAGATTCAGTTTTACAGT
ATAGAGGTGGGTCTCATCTCACCAGGTTTAGTATCCCCAAAGCGCTTAGG
AAAGCGCCTGCCAGGAAGCAGGAATCCTGTGAGCGATCCCTTACTAACAC
CTACTTCATGGTTGCAAAATCTAATCTGTGTCCCTACTTGTGTTTCAGAG
CTGACCCACAGGCTTTTATTTACAAAGTCTGAACTTGACTTCAGAGCACA
GATGGCAGAGCCTCTGTCCTGTGAAGTGAGTGTTATTTGGTAACATAGGT
GCCAGTCTGTGGAGAAGGTGAAGAAAGGCCTGTCTGGTAGCGTAAAAGTA
ATGGCCCTTAGGGTCTCTTACTCTCGTACCGGGTATGGATTCCTTGCTTG
TGCATCTTTTTCCTCGTCTATCCGCGGTGCTATTAAATTGGCTTCCGTCC
CTTCACCGCTTCTCTGTGTTACCCCCGTTATCTTTTCCCACTTTTAACTG
CCATATTTAACTGTTGTCCTTTTTTTTTATCCCCCACTTTTCCCCCTACT
TTGTCTCCCTTTTTTCATCTCATTTATGTTCCCTTTTTATCTCTTACTTT
CCTTTGGCTTCCATGTTTCCATTCTATACTAATTCAAAATTACCN
GCTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTTCTCTCCCTGGAGTCCACTAATGACATTTGACA
TGATGATGGGGGGGGGGGGGANNNTNNNNNNNNNTTNNNNNNNNNNNNNN
TNNTNNNNNNGGGTGGGGGGGGGGTTTTTGGTTTTTTTTTGTTGGTTGTG
GTGTTTTTGTGTGGNTTGTTTGGGGGTGTGTTTGTGGGGTTTGTTGTTGG
TTGTTGGGGGTGGGNGGGTTCTGTTGTGTTGCGNGGTCTGGGTGTGCGTG
GGTTTTTTTTCCNCCCCGCTCTGTCCTGTCCGCCTCTTCTCTTCTTCTTC
CTCTTCTCTCCGCGGTGGTGCGCCCTCTCTGGCTCCTTCGTCGTGCCCCC
CCCCCCCCGCCCGTGGGTTTCCTTCCTCCTTTCTTATCCCTTTTGTTCCG
TCTTGTTCCTTTTCTCTTTCCTTCTCGCTCCCCCGCCCCCGTTTTCCCTT
CCCCGTGTTCCCCTTCCCCTTCATCCCCCTTTCTCCCCCTCTGTTCCTTC
TCTTCTCCGCTTCTCTCGTTTCTTCGCTCCCTTCTTCTTGCTCTTCCTCT
CTCCTCCTTCCTCCCCTTTTCCTCTTTCCTCCTCCTTTTCTCTTGCCCCT
CCCCTTCTTCCTTTTTCCCTTTCCTTTTCTCCCCCTTTCTTTGCTTTCCT
GGTTCCCTTCTCTCCTTCCTCCGTTTCTTTTCCCCTCCTTTTCCCTCCCC
CCCTCTTCCTCCTCTTCTTTCTCTTCCCTCCCCCTTCTCTCTCCCTCTTC
TCCCCCTTTTTCTTTCTTTCCCTCCCCCTTCTCTCTTTTTCTCTTCTCCC
CTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_p15.b1 MSMg01no432_p15.b1 CHROMAT_FILE:
MSMg01no432_p15.b1 PHD_FILE: MSMg01no432_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:55 2005
         (430 letters)



>mm_chr4_102245642_102246471
          Length = 830

 Score =  762 bits (394), Expect = 0.0
 Identities = 418/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagagctgacagggagcataaatgtaacgccttacagagggtggaagactgcga 64
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagagctgaaagggaacataaatgtaacgccttacagagggtggaagactgcga 264

                                                                       
Query: 65  agaagacctttggaactggaggcgcatggttccaattctgccagtctcacttgctagtct 124
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaagagctttggaactggaggcgcatggttccaattctgccagtctcacttgctagtct 324

                                                                       
Query: 125 ttttactcaactgcccagagattcagttttacagtatagaggtgggtctcatctcaccag 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttacttaactgcccagagattcagttttacagtatagaggtgggtctcatctcaccag 384

                                                                       
Query: 185 gtttagtatccccaaagcgcttaggaaagcgcctgccaggaagcaggaatcctgtgagcg 244
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttagtatccccaaagcgcttaagaaagcgcctgccaggaagcaggaatcctgtgagcg 444

                                                                       
Query: 245 atcccttactaacacctacttcatggttgcaaaatctaatctgtgtccctacttgtgttt 304
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 445 atcccttactaacacctacttcatggttgcaaaaccaaatctgtgtccctacttgtgttt 504

                                                                       
Query: 305 cagagctgacccacaggcttttatttacaaagtctgaacttgacttcagagcacagatgg 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagagctgacccaaaggcttttatttacaaagtctgaacttgacttcagagcacagatgg 564

                                                                       
Query: 365 cagagcctctgtcctgtgaagtgagtgttatttggtaacataggtgccagtctgtggaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagagcctctgtcctgtgaagtgagtgttatttggtaacataggtgccagtctgtggaga 624

                 
Query: 425 aggtga 430
           ||||||
Sbjct: 625 aggtga 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)