Query= MSMg01no433_c02.b1 MSMg01no433_c02.b1 CHROMAT_FILE:
MSMg01no433_c02.b1 PHD_FILE: MSMg01no433_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
(485 letters)
>mm_chr4_75728028_75728908
Length = 881
Score = 799 bits (413), Expect = 0.0
Identities = 463/481 (96%), Gaps = 4/481 (0%)
Strand = Plus / Plus
Query: 4 ggaattctcttgttttgtccgactgagacagggacttgctattaagctaagctgtctgca 63
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcttgttttgtgtgactgagacagggacttgctattaagctaagctgtctgca 263
Query: 64 aacttccaatcttcctgcctcagcccttccagttcaagaattacaggagtgtcaccatag 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 264 aacttccaatcttcctgcctcagccattccagttcaagaattacaggagtgtcaccatag 323
Query: 124 caggctggaacttggagttcttcacttactgtttaaatgtcccatcccatatagtgcctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caggctggaacttggagttcttcacttactgtttaaatgtcccatcccatatagtgcctt 383
Query: 184 ggccaccatgtcctcacaagttgccccctatatatgaaaccgttctcagtcatcagtgga 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 ggccaccatgtcctcacaagttgccctctatatatgaaaccgttctcagtcatcagtgga 443
Query: 244 ctctcttcttattgcaacctttatgttttatctttgtttcctcttttcatcttattgctt 303
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 ctctcttcttattgcaacctttatgttttatctttgtttcatcttttcatcttattgctt 503
Query: 304 ctatgttctgccattccccataaaagctaatgcttcttgggtggctcccagatttgtgcc 363
|||||||||||||||||| ||||||||||||||| || ||||||||||||||| ||||||
Sbjct: 504 ctatgttctgccattccctataaaagctaatgctgctcgggtggctcccagatatgtgcc 563
Query: 364 tatagtctcacttcacttttctgaacccacacttttgactggatagttcataaaaaagac 423
|||||| ||||||||||||||||||||||||||| |||||| || ||||| ||| |||
Sbjct: 564 tatagtatcacttcacttttctgaacccacacttctgactg---aggtcatacaaa-gac 619
Query: 424 ctcatttagaatatatattcactgctgagttcaacagcgattttcatttttgtatttcac 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcatttagaatatatattcactgttgagttcaacagcgattttcatttttgtatttcac 679
Query: 484 a 484
|
Sbjct: 680 a 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 881
Length adjustment: 10
Effective length of query: 475
Effective length of database: 871
Effective search space: 413725
Effective search space used: 413725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_c02.g1 MSMg01no433_c02.g1 CHROMAT_FILE:
MSMg01no433_c02.g1 PHD_FILE: MSMg01no433_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
(155 letters)
>mm_chr4_75935994_75936548
Length = 555
Score = 290 bits (150), Expect = 2e-83
Identities = 153/154 (99%)
Strand = Plus / Minus
Query: 1 tgtgcctatcaatagggcaggtgatgagtttgcctaaaagagaacaatgaaatgatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtgcctatcaatagggcaggtgatgagtttgcctaaaagagaacaatgaaatgatcttg 295
Query: 61 aagtgtacatagttaggtctgactccagggacatgcagtaaatgaaagaaataggataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 aagtgtacatagttaggtctgactccagggacatgcagtaaatgaaagaaataggataca 235
Query: 121 ttcaagaaaacccatgtggttaggggtgggatgg 154
||||||||||||| ||||||||||||||||||||
Sbjct: 234 ttcaagaaaacccctgtggttaggggtgggatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space: 80409
Effective search space used: 80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
