BAC Information

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BAC

Clone NameMSMg01-433C23
Chromosome4 (Build37)
Map Location 153,597,046 - 153,745,435
singlet/doubletdoublet
Overlap geneMegf6, Arhgef16, Prdm16
Upstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C23.T7 (MSMg01no433_c23.b1)MSMg01-433C23.TJ (MSMg01no433_c23.g1)
ACCAG525026AG525027
length744735
length of high quality
(start - end)		466 (67 - 532)400 (69 - 468)
definitionCHROMAT_FILE: MSMg01no433_c23.b1 PHD_FILE: MSMg01no433_c23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:12 2005CHROMAT_FILE: MSMg01no433_c23.g1 PHD_FILE: MSMg01no433_c23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,744,970 - 153,745,435)(153,597,046 - 153,597,445)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAATTC
CAGCAATTCCCGAGACAGGTTTTCAAGTGGATAGGTACTGAACTCCAAAT
CTGGATGGCATTCCGCCCCACAGCCATAGCCAAACAGCTACAGCAACACC
GCTACCCTCAATCACGACCCTTCCTGTCTCCTGTCTGAGGAGTGCCTAAC
ACATGAGCCCTCACTCTCTCCACCCCTGGAAGCTCTCAGACATCCTTGGA
ACTAACAGAGCTACACAGCTCCCAATGGAGCTTAGGTGCAAGCAGAGGCC
AGACTCAAGACCTGATTAGCTGGGCCGTCGCTGTCGCCTCTGGCATCGGG
TCCTTGTTACCCCAGTGCAGTGAGGGACACGTGCTCAGCGGCCTGTGGCT
GTGGCTGTGGCCTTGATGATCTGACCCCCAGGCCTTCCTCTCAGCATCCC
AGGAACCCTCAGAGTGCAGCACATGTTGGTTGGAGTCCCAGTGGGCCACC
TGAGGGCCCCTCAGCTAGGAAGCACTGCTGAGGCTGAAAGATCAATGTAN
GTAAAAGCCTGCTTCAGAGGCAGCAACGCCCAAGACCTGTGAGGAGCCAA
GCCTGCTTGGAATATTCCAGAAAGGATAGAAAGGCACCTCTCCCCCACTA
AGGCCACCGGTGGTTCAGGCCAAAAAAAGGAATTCTTCCTCCCCGGGAGG
GAGTTTAATATTCACCCCCCCAACCCTGGAGGCTCGGGCCCTGA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAGGAAATTCCCACCATTGGCTTCGCAGGGC
TAGACTGGTGGCTGAGCTCCAAGAATCAGGAGGCAGCCGGCCAGTGTCCT
TTGGCCACCACGGTCCTCATGCAACTGCCCGTATCTCTGAGGCCCTTTGC
TTAGCTGTGAGAGGTTCTTCTAGGAACCCTTCTGACAAGCTGTGAGAGAT
ATTGGGACCACCAGGAGAGCTTTAAGCCATCTCAGACCTGAGAGTGCCCA
CACCTGGTTCTGCCAACTCCCCGTGTGTAGCGTAAGCATTTGGCTTCTTT
CCTAACAACAGCACATGTCAGGTGGAATAAAGGCTTATCTATGTGCACCT
GTGACATGTTGGGATTCCCCTTGCCCTGAGCCTGCCTCCAGGTTGGCTGT
GTTTGGGGACACTGGAGGGTTAGCCTCCCCGGAGCCTCCCCGGACTCAGA
TGAAGCGGTATGACCAGGTGGGTGGACAGAGGCTAAAATACTGACTCCAC
TCTGATGAGTCTACTTATTTGCAAGCGCCCGCCAGCTTCCGGTTGGCCAA
ATTGGTTAGGGGTAAACCCCTGTCTCCTCGTTAGTCTGATCCCCCTTTTA
CTCTCTCCTCTCCCTCGTAAACATACCTTAGAGTCCTTTCGTCGTTTTTT
CTCCTTTACCTTTTCCCCCCTTTTCCCTCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c23.b1 MSMg01no433_c23.b1 CHROMAT_FILE:
MSMg01no433_c23.b1 PHD_FILE: MSMg01no433_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:12 2005
         (466 letters)



>mm_chr4_153744770_153745635
          Length = 866

 Score =  832 bits (430), Expect = 0.0
 Identities = 457/466 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttttcaagtggataggtactgaactccaaatctggatggcattccgccccacagcca 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aggttttcaagtgggtaggtactgaactccaaatctggatggcattccgccccacagcca 607

                                                                       
Query: 61  tagccaaacagctacagcaacaccgctaccctcaatcacgacccttcctgtctcctgtct 120
           |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 606 tagccaaacagccacggcaacactgctaccctcaatcacgacccttcctgtctcctgtct 547

                                                                       
Query: 121 gaggagtgcctaacacatgagccctcactctctccacccctggaagctctcagacatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gaggagtgcctaacacatgagccctcactctctccacccctggaagctctcagacatcct 487

                                                                       
Query: 181 tggaactaacagagctacacagctcccaatggagcttaggtgcaagcagaggccagactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggaactaacagagctacacagctcccaatggagcttaggtgcaagcagaggccagactc 427

                                                                       
Query: 241 aagacctgattagctgggccgtcgctgtcgcctctggcatcgggtccttgttaccccagt 300
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagaccagaaaagctgggccgtcgctgtcgcctctggcatcgggtccttgttaccccagt 367

                                                                       
Query: 301 gcagtgagggacacgtgctcagcggcctgtggctgtggctgtggccttgatgatctgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcagtgagggacacgtgctcagcggcctgtggctgtggctgtggccttgatgatctgacc 307

                                                                       
Query: 361 cccaggccttcctctcagcatcccaggaaccctcagagtgcagcacatgttggttggagt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 cccaggccttcctctcagcatcccaggaaccctcagagtgcagcacatgttggtcggagt 247

                                                         
Query: 421 cccagtgggccacctgagggcccctcagctaggaagcactgctgag 466
           |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 246 cccagtgggccacctgagggcccctcagctaggaagcattgctgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no433_c23.g1 MSMg01no433_c23.g1 CHROMAT_FILE:
MSMg01no433_c23.g1 PHD_FILE: MSMg01no433_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:12 2005
         (400 letters)



>mm_chr4_153596846_153597645
          Length = 800

 Score =  719 bits (372), Expect = 0.0
 Identities = 393/400 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggaaattcccaccattggcttcgcagggctagactggtggctgagctccaagaatca 60
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggaaattcccaccgttggctttgcagggctagactggtggctgagctccaagaatca 260

                                                                       
Query: 61  ggaggcagccggccagtgtcctttggccaccacggtcctcatgcaactgcccgtatctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggcagccggccagtgtcctttggccaccacggtcctcatgcaactgcccgtatctct 320

                                                                       
Query: 121 gaggccctttgcttagctgtgagaggttcttctaggaacccttctgacaagctgtgagag 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcccttagcttagctgtgagaggttcttctaggaacccttctgacaagctgtgagag 380

                                                                       
Query: 181 atattgggaccaccaggagagctttaagccatctcagacctgagagtgcccacacctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atattgggaccaccaggagagctttaagccatctcagacctgagagtgcccacacctggt 440

                                                                       
Query: 241 tctgccaactccccgtgtgtagcgtaagcatttggcttctttcctaacaacagcacatgt 300
           |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgccaacttcctgtgtatagcgtaagcatttggcttctttcctaacaacagcacatgt 500

                                                                       
Query: 301 caggtggaataaaggcttatctatgtgcacctgtgacatgttgggattccccttgccctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggtggaataaaggcttatctatgtgcacctgtgacatgttgggattccccttgccctg 560

                                                   
Query: 361 agcctgcctccaggttggctgtgtttggggacactggagg 400
           |||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 agcctgcctcgaggttggctgtgtttggggacactggagg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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