BAC Information

Click to search

BAC

Clone NameMSMg01-433E18
Chromosome4 (Build37)
Map Location 104,399,186 - 104,399,429
singlet/doubletsinglet
Overlap geneDab1
Upstream geneEG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433E18.T7 (MSMg01no433_e18.b1)MSMg01-433E18.TJ (MSMg01no433_e18.g1)
ACCAG525112AG525113
length808807
length of high quality
(start - end)
244 (73 - 316)243 (67 - 309)
definitionCHROMAT_FILE: MSMg01no433_e18.b1 PHD_FILE: MSMg01no433_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:21 2005CHROMAT_FILE: MSMg01no433_e18.g1 PHD_FILE: MSMg01no433_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGGATCCGCGGAA
TTCCAGTGTACTCCCAGTAGTCCAGACGCAGTGCCATGAAAACCCTGAAA
TAGGTGTGGGTCATCTGGATGGCTGCACAGAACACGAGGAAGAGAATCCT
GACTAGAGATGGACTCAGCTCAGTTTGGATCCTGATCCTACCTTATGCAA
GCTGTGTGACCCTCAGCATTTCCCTTCCTATTGCAATCACCCAAAAAGAA
TAATTGGGCAAGTAGTTACCATGGTGATAAATATGAGAACCTGCCTGGGT
GTGTTTGTAATACCAAACATGTTTTGAGGTATCCTCATTGGCTTAATAAC
CTCCAATTTTTATTTTGTAAACTTGTAAAAAGTAATCCTACAGAAGTAAT
GTATTCCCACCCCCAAAGTAAGGTGTTGTCATTTTTCCATATTTTTTAGA
TATCACGCCCCCTTCCCCTTTTTTTTTGCCCCCCGCCCCCCCTATTTGCT
TATGCCTCCTTTTTCTCCCCCCCCCTGCGCCTTTTTGTACATTCCTCCTT
CTTTTCGACTTTTTCCCCCCCTCTCATCTTTCCCCTCTCCCCTCCCTTTT
TTTTCCTCGCCCCTCTTTTTTTTCCGCCCTTTTCTCTTTCACATCCCCTC
TTTTTTTTGTTTTTCTCCCCCGTTTTTTTTTCTTTTACCCACCTTTTTTT
TCCCCGCCCCTTCTTTTTCTCTTCTCTTACTTTCTCCTATCTCTCACCCT
CTCCTTTTCTCTCTCCCCTCCTTCCCCTCTCTCTTTTTATTTTCCCCTTT
TCTTCTCT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATTGCAGTGGATAGATACCATGACCAAGGCAAC
ACTTACAAAGGAAAACACTAAACTGGGGCTGGCTTACAGTTCAGAGATTT
AGTGCTTTATTGTCATGGTGGAAAGCATGGAAGCATGAGGGCAGACATGG
TGCTGGAGTAGGAGTTGAGAGGTCTACATCTTGATCTGCAGGCAGGAGGA
AGAGACTGTGAGCCATTAGACCTGGCCTGAGCTTCTGAGACTTCTAAGTC
CACCTGCTATTTTCTTATTTTCTACACCTGCTCCAACGTGGCTACACCTT
CTAGTAGTGCCACTCCCTACTAGCCTACGTAGGACATTTTTATTCAAATT
ATCCCTCACCCCCATTTAAGTCCTATCTACCCTTTTGGTCCATTGCCCTC
CCTCCTCCACCTCCCTCATTCCCTTACCGGCATCATCCTCCTACTTCCCT
CCCCCCTTCCCTCCCTATCACCCCCCTTTCACCTCCTCCCACTCCCACCT
GTCCCCTTTTCTCCTCTTCCTTCCTTCCCTCCCTCCCTTCCCTCTTCCTT
TCCCTTCCCTCCTTCTCCCCCTTTTCCCCCCCCTCCCTTCCCCTTTCTTC
CCCTTCCTTTTCCGTCTTTCCCTTCTTTTCTTTTTTCCCCCCCCTCCTTT
TCCCTTCCCTATCACCTCCTCCCCTTTTTCCCTTCCCCTTTTCCCTTCCT
ATTCTCCCTTTTCACTTTCCTTTCCCTATCCCCCCTTTTCACATTTTCTC
TTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_e18.b1 MSMg01no433_e18.b1 CHROMAT_FILE:
MSMg01no433_e18.b1 PHD_FILE: MSMg01no433_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:21 2005
         (244 letters)



>mm_chr4_104398986_104399629
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacgcagtgccatgaaaaccctgaaataggtgtgggtcatctggatggctgcacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagacgcagtgccatgaaaaccctgaaataggtgtgggtcatctggatggctgcacagaa 260

                                                                       
Query: 61  cacgaggaagagaatcctgactagagatggactcagctcagtttggatcctgatcctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgaggaagagaatcctgactagagatggactcagctcagtttggatcctgatcctacc 320

                                                                       
Query: 121 ttatgcaagctgtgtgaccctcagcatttcccttcctattgcaatcacccaaaaagaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatgcaagctgtgtgaccctcagcatttcccttcctattgcaatcacccaaaaagaata 380

                                                                       
Query: 181 attgggcaagtagttaccatggtgataaatatgagaacctgcctgggtgtgtttgtaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgggcaagtagttaccatggtgataaatatgagaacctgcctgggtgtgtttgtaata 440

               
Query: 241 ccaa 244
           ||||
Sbjct: 441 ccaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)