BAC Information

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BAC

Clone NameMSMg01-433I14
Chromosome4 (Build37)
Map Location 85,868,059 - 85,868,346
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3gl2, A930009N24, LOC668052
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I14.T7 (MSMg01no433_i14.b1)MSMg01-433I14.TJ (MSMg01no433_i14.g1)
ACCAG525296AG525297
length739895
length of high quality
(start - end)
291 (73 - 363)---
definitionCHROMAT_FILE: MSMg01no433_i14.b1 PHD_FILE: MSMg01no433_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:39 2005CHROMAT_FILE: MSMg01no433_i14.g1 PHD_FILE: MSMg01no433_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCATTTGCGGCCGCTAGACGACTCCTATATTTCGAAACACCCGCGGAA
TCTCTTATTTCTCTTACAACAGATTTCCTAACAGAAGGATATTGAGTCAT
GGATGCTCCATAAACTTACTGGATAGTGTAACTCATACTTTGCTCTTACT
CATTTCTAGGCTTCTCCTCATAATACCTCACAGAATAAAAATACGTTTGG
GGCACTTGGCTATGGGGCAACATAGGAAGGGATCATGTCTGCCTAATTCT
GAGTCCAAGCAGGACTCACAAGCTTTGTATTATTCCTTTAGAACACTATC
TGGCCACTTTTTGTGTNGCTACTTTTGCTCCTATAGCTTTGTGAAGTGAT
GCACTTGTTATTTACTTACCGTGTAGCTAAATATAACTCTCCCCAATATA
CATACACTTCAAGTCATTATACACTTTATTTATTCATATCGCCAGTGTCT
GCTAATTTTGCACCATTCACACCCATATACCTCATTCGTTTTTCCCCCGC
GTACACGTTTACTGATTCTCCTATTCCTATTACTCCCCACTTCGCTTACT
GCCTCCCCCCCTATTTTATGCCCCTCTTTCCTTCCGCGTATATTCTCTGT
CCCTCTTTTTTTTTTTTCCGCCTTTGTTTATTTTTACCCTTTTATTTCCC
CCCCTTTTTTTTCTTTTCCTTCTTTCACTGCTCCCCTTTCGTTTTCTTCC
CCCCCCTACTCTTTTCTTTTTTTCTCCCCTTTTTTCCTT
TCCCCATTTTCGGCTGCAGTATGTTTCAAAAATATACGTGATCGATAGAA
GGTGCCGCGCGACTCCCTCCAGACACTTATACGACAAGTACCGTTCTCTT
GTGTCGATGCATGGTAGATGAAGAATGACATGCTTTTCTTTGTTATCGGC
CTCTTTGATTATTTGCGACATGTACGTTACTTCGCTGAGGTCGGCGCCTG
CACGTGAGATGCTCCGTCTATCCCCGTTTCTTCTTGTATCTATTTTGTGC
CGTATTGTCCGTGCTACGATTTCCGCATTGTCCCTCCTGCGCTATTGCCT
CCCTTCCCGCCTTTTTCCGTTAGTAATTTCTAGTTCTCTCCACGCCGTTC
ATTACTTCTTTTCTCGGTGCTTTTCTCGATTCGCTCGATTTTTTTTATTG
TATTTCTCCGTTTATCCCGTCCATCTTCAATCGCCGACGTTCCCCCTCGC
TCCGTATATCCCCTTGTATCTCTATGTCTCGTTCCCTAGCACTCCCAACG
ACGCCCACTTCTCAACCTCCCGTTGTTTCATTAGCGTGACTGTCGCCTGA
ATGTGCCTCCGACCTATGCGACCATATCACCCTCCTTACGCCTAGTCTCA
TCTCCCGATTTCCCATCGACTTTTTATCCTTAGAACCATCCTTACCTAAC
GTTACCTTTCGGTGAGCCACGTTCTCTCCCTTTTAGGCCGGCTTCGCTAG
CCTATCTTTCTGAGTTCATTTTGCCGGCTTTGCGCATCTAATGGTTATTG
GCGGGGCCGGCCGTTATCCTTCCGCGTTCCCCGTCCGCGCCCTATTTTCG
GCTTACCCGATTATCCCCATCCGTAGCGGCCTTTTTTCCCGTTTGCCCCT
TCCCATATTCCCCCCGTTATTCCCCATATTTTCGTTTTCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i14.b1 MSMg01no433_i14.b1 CHROMAT_FILE:
MSMg01no433_i14.b1 PHD_FILE: MSMg01no433_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:39 2005
         (291 letters)



>mm_chr4_85867859_85868549
          Length = 691

 Score =  493 bits (255), Expect = e-144
 Identities = 281/291 (96%), Gaps = 6/291 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcctaacagaaggatattgagtcatggatgctccataaacttactggatagtgtaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 488 atttcctaacagaaggatattgagtcatggatgctccataaacttactggctagtgtaac 429

                                                                       
Query: 61  tcatactttgctcttactcatttctaggcttctcctcataatacctcacagaataaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tcatactttgctcttactcatttctaggcttctcctcataatacctcacagaataaaaat 369

                                                                       
Query: 121 acgtttggggcacttggctatggggcaacataggaagggatcatgtctgcctaattctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 368 acgtttggggcacttggctatggggcaacataggaagggatcatgtctgcctaacactga 309

                                                                       
Query: 181 gtccaagcaggactcacaagctttgtattattcctttagaacactatctggccacttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtccaagcaggactcacaagctttgtattattcctttagaacactatctggccacttttt 249

                                                              
Query: 241 gtg-tngctactt--ttgctcctatagctttgtgaagtgatgcacttgtta 288
           ||| | | ||  |  ||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtgct-gtta--tcattgctcctatagctttgtgaagtgatgcacttgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)