Query= MSMg01no434_p14.b1 MSMg01no434_p14.b1 CHROMAT_FILE:
MSMg01no434_p14.b1 PHD_FILE: MSMg01no434_p14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:32 2005
(344 letters)
>mm_chr4_138050260_138051003
Length = 744
Score = 611 bits (316), Expect = e-179
Identities = 337/350 (96%), Gaps = 12/350 (3%)
Strand = Plus / Plus
Query: 1 gtgaacaggcccaggatgtgggaatttcctggagggagctggagggagtgaatcctgtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaacaggcccaggatgtgggaatttcctggagggagctggagggagtgaatcctgtgc 260
Query: 61 ccaaccccagtgccactcagagagctggacacctgcagcttcccatgcaggagataggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaccccagtgccactcagagagctggacacctgcagcttcccatgcaggagataggag 320
Query: 121 caggcaacctgtctttccccattgtctcacgtcatatgtcttttagtgtcttatggttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcaacctgtctttccccattgtctcacgtcatatgtcttttagtgtcttatggttga 380
Query: 181 ataggtcccgacccctccgcaggcactccggctctgggcagccttttgcctgcattggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggtcccgacccctccgcaggcactccggctctgggcagccttttgcctgcattggat 440
Query: 241 ctcac---ttttttt---cttgcttcctgtaaaggtaaagagcccagctctgtattagct 294
||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ctcacggct------ggccttgcttcctgtaaaggtaaagagcccagctctgtattagtt 494
Query: 295 acacgcactaactcagggatctcagggctgccccagagctccctgcagcc 344
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acacgcactaactcagggatctcagggctgccccagagctccctgcagcc 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_p14.g1 MSMg01no434_p14.g1 CHROMAT_FILE:
MSMg01no434_p14.g1 PHD_FILE: MSMg01no434_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:33 2005
(246 letters)
>mm_chr4_138244306_138244951
Length = 646
Score = 468 bits (242), Expect = e-136
Identities = 245/246 (99%)
Strand = Plus / Minus
Query: 1 attctgacattttcattggcctgtgttataaacaaatcaacacggccatttggcacacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 attctgacattttcattggcctgtgttataaacaaatcaacacggccatttggcacacct 252
Query: 61 tgttggtttcgtcttgtgagaatagaaacttaggttggttacagattagctggggctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgttggtttcgtcttgtgagaatagaaacttaggttggttacagattagctggggctggt 192
Query: 121 gagaggggatggtgctagcctctaagccagatggctcaagttctgtccctgacgtccaca 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gggaggggatggtgctagcctctaagccagatggctcaagttctgtccctgacgtccaca 132
Query: 181 tggtggaaggaaagaaccaactctgggaaatgtcctctgactcccacaggagtcatatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggtggaaggaaagaaccaactctgggaaatgtcctctgactcccacaggagtcatatgt 72
Query: 241 gcccat 246
||||||
Sbjct: 71 gcccat 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
