Query= MSMg01no435_j21.b1 MSMg01no435_j21.b1 CHROMAT_FILE:
MSMg01no435_j21.b1 PHD_FILE: MSMg01no435_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:26 2005
(429 letters)
>mm_chr4_21769393_21770221
Length = 829
Score = 810 bits (419), Expect = 0.0
Identities = 422/423 (99%)
Strand = Plus / Minus
Query: 7 gaattctacatcttcttctgaaggctgttagcagaatactgacttccaggaagctagtgt 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gaattctacatcttcatctgaaggctgttagcagaatactgacttccaggaagctagtgt 730
Query: 67 gagggtcttaagctcagacccacagtgacacatctagtccaacaaggccacacctcctaa 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gagggtcttaagctcagacccacagtgacacatctagtccaacaaggccacacctcctaa 670
Query: 127 tagtgccactgcctgggccaagcatatacaaaccatcacattgatcttgaggataaaacc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tagtgccactgcctgggccaagcatatacaaaccatcacattgatcttgaggataaaacc 610
Query: 187 acctgaactatgacccttgaaaagggagtcattgtggtttcaagtgtgaaagaaaagcta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acctgaactatgacccttgaaaagggagtcattgtggtttcaagtgtgaaagaaaagcta 550
Query: 247 agtgcctggtgactagaagggtgtatagagacagagacttctagtaaactcacacaccct 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agtgcctggtgactagaagggtgtatagagacagagacttctagtaaactcacacaccct 490
Query: 307 gttctccttccttgtagtccacaggatcacataactactagcctgtgagcagagaaacac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gttctccttccttgtagtccacaggatcacataactactagcctgtgagcagagaaacac 430
Query: 367 acctataataaaacattactgctagagtgagaattttccacacgctcttctctgctatgg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acctataataaaacattactgctagagtgagaattttccacacgctcttctctgctatgg 370
Query: 427 tga 429
|||
Sbjct: 369 tga 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no435_j21.g1 MSMg01no435_j21.g1 CHROMAT_FILE:
MSMg01no435_j21.g1 PHD_FILE: MSMg01no435_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:26 2005
(309 letters)
>mm_chr4_21608221_21608931
Length = 711
Score = 574 bits (297), Expect = e-168
Identities = 307/311 (98%), Gaps = 2/311 (0%)
Strand = Plus / Plus
Query: 1 gccaacttgagctattcgaggccagcttgagctatatagtgagttccagaccagcctggg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gccaacttgagctattcgaggccagcttgagctatatagtgagttccagaccagccgggg 260
Query: 61 ctacgtaacaagctcaaggaggggtgggcggagtttattccacaagaggtcaaaggagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctacgtaacaagctcaaggaggggtgggcggagtttattccacaagaggtcaaaggagac 320
Query: 121 ctgggagaaatgcggagataaggatttatctataacagtctatctcagttgttggttgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggagaaatgcggagataaggatttatctataacagtctatctcagttgttggttgaa 380
Query: 181 gacttaggcaaaaccatctcaatattcctgctgcctatggaaagcaggattttatgtaga 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gacttaggcaaaaccatctcaatattcctgctgcctatgaaaagcaggattttatgtaga 440
Query: 241 aaagatgttttactaaaacaactcttggaaagagaagtgaccccttagttttttttttt- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagatgttttactaaaacaactcttggaaagagaagtgaccccttagtttttttttttt 500
Query: 300 -gggggggggg 309
||||||||||
Sbjct: 501 tgggggggggg 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 711
Length adjustment: 9
Effective length of query: 300
Effective length of database: 702
Effective search space: 210600
Effective search space used: 210600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
