BAC Information

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BAC

Clone NameMSMg01-435P08
Chromosome4 (Build37)
Map Location 74,414,302 - 74,414,643
singlet/doubletsinglet
Overlap genenone
Upstream geneRasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435P08.T7 (MSMg01no435_p08.b1)MSMg01-435P08.TJ (MSMg01no435_p08.g1)
ACCAG527140AG527141
length768766
length of high quality
(start - end)
345 (50 - 394)378 (82 - 459)
definitionCHROMAT_FILE: MSMg01no435_p08.b1 PHD_FILE: MSMg01no435_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:54 2005CHROMAT_FILE: MSMg01no435_p08.g1 PHD_FILE: MSMg01no435_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTATTATCCTGTATTTCACCTCCGGGGAAATTAAGATTGG
AATCAGAGGAGTTGACTGAAGGTCATAACATTCTTAGCAGTATGTAAACC
TGTTTGACTTCGGGATTCTTTCATTAACATAGGACCATGAAAAATTTCTA
ACAGATGTCACACTTTTCCATCAAAGGTCTGTGGTGTAAAAGAAAGCATC
TAATCAACTATGCTGTCAGATTGCTATAGTCACTTTTTGGGAGATAGAAG
GAATATTTATCGTTCTTAATCTTTCCCACCAGGAACTGATATTGTGTTCT
CCCAAATTCTTTGATCCCTCCAAATAGGGAGGTTGTGTAAGCTGAACAGC
ATTAAATGATGGGTATCTCTTGCCACATGTTTTAATTTGCACATGAAAAT
ATGATTACCGCCCACTGTGATGGCCTTGCTCTTGTCTTATAGCATACCAA
GATAAGCCTGCTCGCTTTTTTCTTTTTCTAAACCTTATTTTTTTCAATTT
ATGCCTAGCTTTCCACGTTTTCCCCCCCCCCCTTAATCCTTGGTTTTTTC
TTCCCTTTTCCTCTCCTTTTCTCCTTTTTTTCTCTCTCTCTATCCCCACT
TTTTTATCTCCCCCCTTATCCTTTTCCCCCCCTTTTTCCCGTTCTTCTTC
ACCTCCTTCCCCCCCCTTTATTTTTTTTTTATCCCCCTTTTCTTTTCCTA
TTTATCCCCCCTCTTCCG
NTTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAA
AATCAATTAACCCCATTAAAAAATGTGGCTCAGAGCTAAACAAAAAATTC
TCACCTGAGGAATACCAAATGGCCGAGAAGCACCTGAAAAAATGTTCAAC
ATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCCATC
TCACAAAATGATCTAAGATCAAATATTCAGGTGACAGTAGATGCTGCCGA
GGATGTGGAGACAGAGGAACACTTCTCCATTGTTGGTGGGATTGCAAGCT
TGTACAACCATTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACA
TAGTACTACTGGAGGATCCTGAAATACCTCTCCTGGGTATATATCTAGAA
GATATTCCCACTGTTAATAAGGACACAAGCTCCACTATGTTCATAGCAGC
CTTATTTATAGTACCCAGAAGCAGGAAAGAACCCAGATGTTTCTCAACAG
AGGAATGGATACTAAATATGAGGGACTTTTACCCTATGGAGTACTAATTC
TGCCTTTAAAAAAAAGGACTTTTTGATATTTCCAGGCATAATGAGTGTGC
CCCGACTGGTATCCTTCTGTATCCACTTATTTTCTTTCCTCCTAAAAACT
CCCCTCTCTTTGTTTTTTCTGTTACTTATGTCCTTTCCCCCTTCTTTCTA
TTTTCTTTTACCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_p08.b1 MSMg01no435_p08.b1 CHROMAT_FILE:
MSMg01no435_p08.b1 PHD_FILE: MSMg01no435_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:54 2005
         (345 letters)



>mm_chr4_74414099_74414843
          Length = 745

 Score =  561 bits (290), Expect = e-164
 Identities = 329/342 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtattatcctgtatttcacctccggggaaattaagattggaatcagaggagt 63
           |||||||||||| ||  |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattctgtatgattatgtatttcacctccggggaaattaagattgcaatcagaggagt 263

                                                                       
Query: 64  tgactgaaggtcataacattcttagcagtatgtaaacctgtttgacttcgggattctttc 123
           ||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 264 tggttgaaggtcataacattcttagcagtatgtaaacctgtttgacttctggattctttc 323

                                                                       
Query: 124 attaacataggaccatgaaaaatttctaacagatgtcacacttttccatcaaaggtctgt 183
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 324 attaacataggtccatgaaaaatttctaacagatgtcacatttttccatcaaaggtctgt 383

                                                                       
Query: 184 ggtgtaaaagaaagcatctaatcaactatgctgtcagattgctatagtcactttttggga 243
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 384 ggtgtaaaagaaagcatctaatcaactacgctgtcagattgctatagtcactttttggga 443

                                                                       
Query: 244 gatagaaggaatatttatcgttcttaatctttcccaccaggaactgatattgtgttctcc 303
           ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct: 444 gatagaaggaatatttatcgttcttaaacttccccacaaggaactgatattgtgttctcc 503

                                                     
Query: 304 caaattctttgatccctccaaatagggaggttgtgtaagctg 345
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caaattctttgatccctccaaatagggaggttgtgtaagctg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)