Query= MSMg01no436_p19.b1 MSMg01no436_p19.b1 CHROMAT_FILE:
MSMg01no436_p19.b1 PHD_FILE: MSMg01no436_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:12 2005
(577 letters)
>mm_chr4_52634388_52635365
Length = 978
Score = 1042 bits (539), Expect = 0.0
Identities = 565/574 (98%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 5 gaattc-caccccttaacacagtttgttctttccaaaacagattgccaacatactcgatt 63
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gaattcacaccccttaagacagtttgttctttccaaaacagattgccaacatactcgatt 719
Query: 64 cttcattgccctcttgtagttcaacaactctgtaggttcctccaatgtgacctcaattag 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 718 cttcattgccctcttgtagttcaacatctctgtaggttcctccaatgtgacctcaattag 659
Query: 124 aatccaaaataacaatttttaaagtaataaattgtatcatgtaaatattaaggagggtgg 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aatccaaaataacgatttttaaagtaataaattgtatcatgtaaatattaaggagggtgg 599
Query: 184 aaacggtacttgggagaacctgactcagtaattgcagtttgcaaacagcatttgcaaaca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aaacggtacttgggagaacctgactcagtaattgcagtttgcaaacagcatttgcaaaca 539
Query: 244 aaggttatgcatacaaccagcccatttcattgctacattacctttgactattttttatta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaggttatgcatacaaccagcccatttcattgctacattacctttgactattttttatta 479
Query: 304 tgagatcagagttataccagacagtgtatccccaaatgtccgaactatcatctgccccct 363
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 478 taagatcagagttataccagacagtatatccccaaatgtccgaactatcatctgccccct 419
Query: 364 tgatggaaaaaacatcgctgatgcctgactaagaatgttttgtaaattctaactaaattg 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgatggaaaaaacgtcgctgatgcctgactaagaatgttttgtaaattctaactaaattg 359
Query: 424 caacgtgttcttttcaagaatcctttattttgcctgcttatgtaatctcttttctctttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caacgtgttcttttcaagaatcctttattttgcctgcttatgtaatctcttttctctttc 299
Query: 484 agttttctaaatcctcacagccaatgaatgcttttactacttccaaagcatggtgataat 543
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 298 agttttctaaatcctcacagccaatgaatgctcttactacttccaaagcatggtgataat 239
Query: 544 tatatatganagcatgtgttctaacacatagcag 577
||||||||| ||||||||||||||||||||||||
Sbjct: 238 tatatatgaaagcatgtgttctaacacatagcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 978
Length adjustment: 10
Effective length of query: 567
Effective length of database: 968
Effective search space: 548856
Effective search space used: 548856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_p19.g1 MSMg01no436_p19.g1 CHROMAT_FILE:
MSMg01no436_p19.g1 PHD_FILE: MSMg01no436_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:12 2005
(568 letters)
>mm_chr4_52576058_52577025
Length = 968
Score = 1029 bits (532), Expect = 0.0
Identities = 558/568 (98%), Gaps = 4/568 (0%)
Strand = Plus / Plus
Query: 1 agcatgtgtccctggaagttttgtacatcacaaacacaggccttcattagcttatatata 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatgtgtccctggaagttttgtagatcacaaacacaggccttcattagcttatatata 260
Query: 61 cttatatatactttcctctgtgtgtatggtggactgggactgagccactcacagaatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatatatactttcctctgtgtgtatggtggactgggactgagccactcacagaatggc 320
Query: 121 agtgacagataaagtaagaagtaagcacacacacagagacacacagacacacacagacag 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 agtgacagataaagtaagaagtaagcacacacacagagacacacag--acacacagac-- 376
Query: 181 acaaacagacacacacacacacacacacacacacacacacacacacacacacacacacac 240
||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acacacagacagacaaacagacacacacacacacacacacacacacacacacacacacac 436
Query: 241 aaaacctcagcaccatggcatacataaactaggagcagagtcctgtgccagatattataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaacctcagcaccatggcatacataaactaggagcagagtcctgtgccagatattataa 496
Query: 301 atcctagtataaaggctagtactacgatcctgttgcttgcttataattcccattttcact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atcctagtataaaggctagtactacgatcctgttgcttgcttataattcccattttcact 556
Query: 361 gattcagacatacagagcattgaggatcgttgaaagtaaggtaagagcccacactgctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gattcagacatacagagcattgaggatcgttgaaagtaaggtaagagcccacactgctct 616
Query: 421 ttctgtggttggaaatgcatttaatttactgaggacagagaacacatgtgaaggaagaga 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 617 ttctgtggttggaaatgcatttaatttactgagaacagagaacacatgtgaaggaagaga 676
Query: 481 gcacaaattctaatagtctatacatcattggtcaaactctctcacttacatattttagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcacaaattctaatagtctatacatcattggtcaaactctctcacttacatattttagac 736
Query: 541 ctgagacacaggaggtgtaggtgacctg 568
||||||||||||||||||||||||||||
Sbjct: 737 ctgagacacaggaggtgtaggtgacctg 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
