Query= MSMg01no437_l15.b1 MSMg01no437_l15.b1 CHROMAT_FILE:
MSMg01no437_l15.b1 PHD_FILE: MSMg01no437_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:12 2005
(612 letters)
>mm_chr4_3736936_3737950
Length = 1015
Score = 1019 bits (527), Expect = 0.0
Identities = 577/609 (94%), Gaps = 26/609 (4%)
Strand = Plus / Plus
Query: 6 gaattctctcaccactctcctgtcatagctttctgagtagctggggttatagatatatat 65
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctctcaccactctcctgtca--gctttctgagtagctggggttatagatatatat 265
Query: 66 ctaataacagtagaaactatgtagaggttttgtgagaaatccctgcactcaacagttttc 125
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 266 ctaataacagtagaaactatgtagaggttttgtgagaaatccctgcactcatcagttttc 325
Query: 126 tgaaaacctaaaactgttctacaaaatcaaattaaacataacagcaaaacccaaaagtca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgaaaacctaaaactgttctacaaaatcaaattaaacataacagcaaaacccaaaagtca 385
Query: 186 atctgtcctatgagttggttcctacatagaaaagcatacatattttattcaaaatcctac 245
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 atttgtcctatgagttggttcctacatagaaaagcatacatactttattcaaaatcctac 445
Query: 246 tcaacacaccacttattcactgggaccattttcattttaactgtggggattattcagaaa 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcaacacaccacttattcactgggaccattttcattttaactgtggggattattcagaaa 505
Query: 306 gttaaaccttcactaagtacaaaaataaatgtattttcctcacttctgaaaatgcaataa 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttaaaccttcactaagtacaaaaataaatgtattttcctcacttctgaaaatgcaataa 565
Query: 366 acccacctctgaaggaggctttaaatactagtcagttctt---aattcctcacgaaacag 422
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 566 acccacctctgaaggaggctttaaatactagtcagttcttcttaattcctcacgaaacag 625
Query: 423 caccatctagcatcctgttgtatgaataacccacaaaaggctctggctacttccctttag 482
||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caccatctagcgtcctgttgtatgaataacccacaaaaggctctggctac---------- 675
Query: 483 acataaatttggtcctagttcaaaaccgaaatggctcataccaggtatctgtacgtgtga 542
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 -----------gtcctagttcaaaaccgaaatggctcataccaggtatctgtacgtgtga 724
Query: 543 agataccactgtaaatcccatcagcttttgaaacgtgtgttcataattataataaaaaca 602
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 725 agatagcactgtaaatcccatcagcttttgaaatgtgtgttcataattataataaaaaca 784
Query: 603 caaaaggac 611
|||||||||
Sbjct: 785 caaaaggac 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1015
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1005
Effective search space: 605010
Effective search space used: 605010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_l15.g1 MSMg01no437_l15.g1 CHROMAT_FILE:
MSMg01no437_l15.g1 PHD_FILE: MSMg01no437_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:12 2005
(537 letters)
>mm_chr4_3902084_3903020
Length = 937
Score = 961 bits (497), Expect = 0.0
Identities = 527/537 (98%)
Strand = Plus / Minus
Query: 1 ccatactcctgcaagatagtttgtccactttcttgggtctccccacccacccaatgtgtg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 737 ccatactcctgcaagatagtttgtccactttcttgggtctccccacacacccaatgtgtg 678
Query: 61 ttctagtgatataataagcacagttgtcacaatacaattatatttatttctacatggatt 120
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 677 ttctagtgatataataagcacagttgtcccaatacaattatattgatttctacatggatt 618
Query: 121 ctgtctttcactttaaaaagctatgccaaagactacaactgacatatctttgcattcttt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctgtctttcactttaaaaaactatgccaaagactacaactgacatatctttgcattcttt 558
Query: 181 gagtttatcaaagcccaattatattctagatgctgaatgagtgattactgactagctgga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 557 gagtttatcaaagcccaattatattctagatgctgaatgagtgattactgactagccgga 498
Query: 241 agagtgttttagcagatggagcaattggcaaggtgtgaatgaaagaattaattctacaaa 300
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agagtggcttagcagatggagcaattggcaaggtgtgaatgaaagaattaattctacaaa 438
Query: 301 cacaggaataaactaaactttcctgtggtgaaaatgtaggtttaatcatataatcataca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cacaggaataaactaaactttcctgtggtgaaaatgtaggtttaatcatataatcataca 378
Query: 361 atatattctacatgccacgtatggtggttctataaagtaactaagaaccaaagaggattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atatattctacatgccacgtatggtggttctataaagtaactaagaaccaaagaggattt 318
Query: 421 agtcacaatgaataatcaactctttacaccttagtgtgaatagtcttcaaaggtgggaga 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 317 agtcacaatgaataatcaactctttacaccttagtgtgaatagtcttcagaggtgggaga 258
Query: 481 agagcgccatctgctgaacaaatagagcattttaaaatgttcctgagtaaaatgact 537
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 257 agagcgccatctgctgaacaaatagagcatttaaaaatggtcctgagtaaaatgact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
