Query= MSMg01no438_a10.b1 MSMg01no438_a10.b1 CHROMAT_FILE:
MSMg01no438_a10.b1 PHD_FILE: MSMg01no438_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:38 2005
(583 letters)
>mm_chr4_18330643_18331625
Length = 983
Score = 920 bits (476), Expect = 0.0
Identities = 545/590 (92%), Gaps = 34/590 (5%)
Strand = Plus / Minus
Query: 5 gaattcagtctccaattacgcctttatagtctactcaaattttggacattgcctcttatc 64
|||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 590 gaattcagtctccaatcaggcctttatagtctacttaaattttggacattgcctcttatc 531
Query: 65 tgtagaactgtgactctcactctgtctgtctctgtctctgtc------------------ 106
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgtagaactgtgactctcactctgtctgtctctgtctctgtctctgtctctgtctctgtc 471
Query: 107 ----------------tctctctctcttgaacaaatttgcttcagaaaagtcatcattaa 150
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctgtctctgtctctgtctctctctcttgaacaaatttgcttcagaaaagtcatcattaa 411
Query: 151 gaatccctgctctaccttttagcagatttaaaccttcttatatgctcttcagagttcaac 210
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaatccctgctctacccttcagcagatttaaaccttcttatatgctcttcagagttcaac 351
Query: 211 aaaccaaaaatgcatttctcaagaacctaagaatacgctggggttttagctcagttaatt 270
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 350 aaaccaaaaatgcatttctcaagaacctaagaataggctggggttttagctcagttaatt 291
Query: 271 gagtgtactggcagtgaatgaagcccaaggtttggtccattgcactgcaagcacataatc 330
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 290 gagtgtactggcagtgaatgaagcctaaggtttggtccattgcactgcaagcacataatc 231
Query: 331 ccagcttttgggaagtggagacaggagattttgaggttcaaagtcatgctcaactaatag 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ccagcttttgggaagtggagacaggagattttgaggttcaaagtcatgctcaactaatag 171
Query: 391 catgttcaaggtcagcccgacactcatgagaccctacctaaaaacacaaaacgaaacaaa 450
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 catgtttaaggtcagcctgacactcatgagaccctacctaaaaacacaaaacgaaacaaa 111
Query: 451 tgaaaaaacacacaaaacctcttgggagtcatgtctttgaatcatacaattagaaaatac 510
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 110 tgaaaaaacacacaaaacctcttgggagtcatgtctttgaatcatacaattaggaaatac 51
Query: 511 attcccataatttccacaatctatgagtgtaatatcctaacttatacaat 560
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 50 attcccataatttccacaatctatgagtgtaatatcctaacttaaacaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_a10.g1 MSMg01no438_a10.g1 CHROMAT_FILE:
MSMg01no438_a10.g1 PHD_FILE: MSMg01no438_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:38 2005
(369 letters)
>mm_chr4_18158245_18159013
Length = 769
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%)
Strand = Plus / Plus
Query: 1 cattaagtttctgagtgagtggaagcctatcatggctgtggacatatttataaaggagct 60
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 120 cattaagtttttgagtgagtggaagcctatcatggctgtgaacatatttataaaggaact 179
Query: 61 catgaatatgttctcctaactatgggctatagtctagtgtgttatcatgaaacaggtatg 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 catgaacatgttctcctaactatgggctatagtctagtgtgttatcatgaaacaggtatg 239
Query: 121 tgctcatatgctcctgttaaatagtagagaaaactgaatcttggaagatctagtgatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgctcatatgctcctgttaaatagtagagaaaactgaatcttggaagatctagtgatgtt 299
Query: 181 cattagagtccaaagacaatcattatcaccatctataccacaaataattgtaagaggttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cattagagtccaaagacaatcattatcaccatctataccacaaataattgtaagaggttc 359
Query: 241 ttctcgtgataagttggtagaaataagagtgtaaagtgaaatgtttt 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctcgtgataagttggtagaaataagagtgtaaagtgaaatgtttt 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space: 273600
Effective search space used: 273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
