TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAGGAAGTCTCTAATTTCTCTCTTTATTTCTGTCTTGACCTAGTGGTTA
TTCAATAGAGATATGTCTAGTTGCCATGAGTCTATAGGCTTGCTGTTGTT
CATGTTGCTATTAAAATTCAGATTTAATCCATGGTGATCTGATAAGATAC
AGTTGGCTACTTTCATGAGGCATGTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTGTATGTTAAGTCTTGCTTTGTGACTTA
GTATGTGGCCAGTTTTGTTTTTCAGTTCTGTGAGGTGCTGAAAAAAAGGT
ATATTCTTTTGTGTTTGGGTGTAATTTTCTACAGATATATGTTAAGTCTA
CTTGATTCATAACATCTACTAGTCCATTATTTTTCTATTTTGTCTTTTGT
CTGGATGAACTGTTCATTGGTGAGAGTGGGTGTTGAAGTCTCCTAGTATT
AATGTGAGGGGTTCAATGATTTAAGCTTTAGCAATATTTGATTTATAATG
TGGATATCCTTACTTGTTTATTGCTCTATTTTCATTTTCCAGCGTTCAGT
AGTTTCTATTAATCCTGCACTTTATTGGTGTTTCTTTTCACTTGGCTTCC
TTTTATTTTTTTTTCCTCTCTTCCCTACTAATGTAGCTATAACACTTTTA
TCTTATTTTTCTCTATTTTTCGTCTCATGTCGATTCTTCTCCACTTTATA
TTACN

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTTACGAGAATCTGAATCAAGTCATCA
GAATCCAATTCTCTCTGCAACCTAGCAGTCTACCAAATAATAGTTCTCAG
GGCCTGTCGATGAGTGGTATTTAAATTCAAATATACAGCTTGGCAAATAT
ATACAACTCTACAAAGATGCTAACTGTTTGAATATTAAATACTAATAAAA
ACAAAAGCAAAGTAGTTTGTACTGTACTGTTTGAAGGAGACTGATAAAGG
ACATTTCTTTACAAACCTGATCAAGTGAAAAATTACTGAACATCAGAAGT
TTTTCACTGTCATGCCTATAATATCATTATCATTAAATTTCTATTTTTTA
AAAATATAAAAAGTTGTGTAGAAATATAGAATATTTCCTGCACTCTGTTG
GCAAATTATATACATTATAATATGGTGTTTATTATGAATTTATATAGGAA
GAGATTAATCACCTTTATCATAAATTGCATATGTATTAAAATCTATACAT
ATATGATGTGCATTCTCATACAGTATTATGAAGACTCTATATCTGTCACA
CAAATTAACCATCAAGTACACTAAAATAAAATGCAAGCCATACTTANAAC
TTAAAAAAAATCATTAGAGAACCACTTTTATGAGAAAAAATGCTATTTTT
AAATGGATTATTTCTAATAAAACTGGATCTTTTCCTGAAAGAAGGGACTA
TTAAAAATTTTTTAAATAC

Query= MSMg01no438_e17.g1 MSMg01no438_e17.g1 CHROMAT_FILE:
MSMg01no438_e17.g1 PHD_FILE: MSMg01no438_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:01 2005
         (527 letters)



>mm_chr4_28811698_28812624
          Length = 927

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcttacgagaatctgaatcaagtcatcagaatccaattctctctgcaacctagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctgcttacgagaatctgaatcaagtcatcagaatccaattctctctgcaacctagcagt 438

                                                                       
Query: 61  ctaccaaataatagttctcagggcctgtcgatgagtggtatttaaattcaaatatacagc 120
           ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 437 ctaccaaataatagttctcggggcctgtcaatgagtggtatttaaattcaaatatacagc 378

                                                                       
Query: 121 ttggcaaatatatacaactctacaaagatgctaactgtttgaatattaaatactaataaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 377 ttggcaaatatatacaactctacacagatgctaactgtttgaatattaaatactaataaa 318

                                                                       
Query: 181 aacaaaagcaaagtagtttgtactgtactgtttgaaggagactgataaaggacatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aacaaaagcaaagtagtttgtactgtactgtttgaaggagactgataaaggacatttctt 258

                                                                       
Query: 241 tacaaacctgatcaagtgaaaaattactgaacatcagaagtttttcactgtcatgcctat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacaaacctgaacaagtgaaaaattactgaacatcagaagtttttcactgtcatgcctat 198

                                                                       
Query: 301 aatatcattatcattaaatttctattttttaaaaatataaaaagttgtgtagaaatatag 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 197 aatatcattatcattaaatttctattttttaaaaatataaaacgttgtgtagaaatatag 138

                                                                       
Query: 361 aatatttcctgcactctgttggcaaattatatacattataatatggtgtttattatgaat 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 aatatttcctgtactctgttggcaaattatatacattataatatggtgtttattatgaat 78

                                                                       
Query: 421 ttatataggaagagattaatcacctttatcataaattgcatatgtattaaaatctataca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ttatataggaagagattaatcacctttatcataaattgcatatgtattaaaatctataca 18

                            
Query: 481 tatatgatgtgcattct 497
           |||||||||||||||||
Sbjct: 17  tatatgatgtgcattct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)