Query= MSMg01no438_k19.b1 MSMg01no438_k19.b1 CHROMAT_FILE:
MSMg01no438_k19.b1 PHD_FILE: MSMg01no438_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:32 2005
(628 letters)
>mm_chr4_111077537_111078570
Length = 1034
Score = 1164 bits (602), Expect = 0.0
Identities = 621/632 (98%), Gaps = 10/632 (1%)
Strand = Plus / Plus
Query: 5 gaattcataaggaattac---tgaaaaagccgactgataatatctggcacctcctgcatg 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataaggaa--aaaaatgaaaaagccgactgataatatctggcacctcctgcatg 262
Query: 62 agacacacattgctctaagaactctgcacatattgcctcaggtcaacacatatacagtaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agacacacattgctctaagaactctgcacatattgcctcaggtcaacacatatacagtaa 322
Query: 122 ccttatatggctctgtctgacacttgaaaaacatggagtcaagacacttggccaatctat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccttatatggctctgtctgacacttgaaaaacatggagtcaagacacttggccaatctat 382
Query: 182 cacagtgccttggggatgatggaacagtaagtgaactcaaatctgagtttagaacccagg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacagtgccttggggatgatggaacagtaagtgaactcaaatctgagtttagaacccagg 442
Query: 242 acattttgacatttcattgctgtaccaccatgtctccagattcagtccctgagatagagc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acattttgacatttcattgctgtaccaccatgtctccagattcagtccctgagatagagc 502
Query: 302 tgagattactgactggagaccattccataccccagtgatgtaacagggtatgttagctga 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgagattactgactggagaccattccataccccagtgatgtaacagggtatgttagctga 562
Query: 362 gtgggaggcagggtccttcctctccagctacctattatgtttaccaactgacaaaagctt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtgggaggcagggtccttcctctccagctacctattatgtttaccaactgacaaaagctt 622
Query: 422 ctccctgggcattttatcccgagccatattacccatgtccacctctttctcattcatcct 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctccctgggcattttatcccgagccatattacccatgtccacctctttctcattcatcct 682
Query: 482 acaaacaaaacaaagcaaaaaa-----aaataaaaacacacaacaccctcatctgattat 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 683 acaaacaaaacaaagcaaaaaataaataaataaaaacacacaacaccctcatctgattat 742
Query: 537 ctcttttcatttatttttcctatgtgttttccatgataattacgatgtgaataataataa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctcttttcatttatttttcctatgtgttttccatgataattacgatgtgaataataataa 802
Query: 597 aagtaacattctgcattctaatataactatta 628
||||||||||||||||||||||||||||||||
Sbjct: 803 aagtaacattctgcattctaatataactatta 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1034
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1024
Effective search space: 632832
Effective search space used: 632832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_k19.g1 MSMg01no438_k19.g1 CHROMAT_FILE:
MSMg01no438_k19.g1 PHD_FILE: MSMg01no438_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:32 2005
(494 letters)
>mm_chr4_111267404_111268297
Length = 894
Score = 870 bits (450), Expect = 0.0
Identities = 483/494 (97%)
Strand = Plus / Minus
Query: 1 aatttttctaagcttaatagaacttaaatgaattgtgtctttaaaataatgtttcctcac 60
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 829 aattttcctaagcttaatagaacttaaatgaattgcgtctttaaaataatgtttcctcac 770
Query: 61 aagacacattatttcctgaaaaaatatttctaagggtaaaaataaaatgaaatgatgaga 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aaaacacattatttcctgaaaaaatatttctaagggtaaaaataaaatgaaatgatgaga 710
Query: 121 aacagtgagagactgagatcatttcacttgtgaagggtctagctgagcaactcaggtcac 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 709 aacagtgagagactgagatcatttcacttgtgaaggggctagctgagcaactcaggtcac 650
Query: 181 acaggcagtctgtggtacaagtgggttgaaatcttcaacaaatctgattcttgagttccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acaggcagtctgtggtacaagtgggttgaaatcttcaacaaatctgattcttgagttccc 590
Query: 241 aaaccaacaggttattttcaaagatcagagactgagttcatagaagcaagtaccttgtct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaaccaacaggttagtttcaaagatcagagactgagttcatagaagcaagtaccttgtct 530
Query: 301 gatgccagcctgagattcagcaacaaggcaagtttggctcagctggcccccgctccagac 360
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 529 gatgccagcctgagattcagcaacaaggcaagtttggctcagctggtctttgttccagac 470
Query: 361 tattctctcctgtctgtgatgagggaataccctattatagctctggttattaagaatcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tattctctcctgtctgtgatgagggaataccctattatagctctggttattaagaatcca 410
Query: 421 cagactttgaccttggctatgggacagatgcaaccaatggaatgtgagtgctcatggcat 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 409 cagactttgaccttggctatgggacagatgcaaccgatggaatgtgagtgctcatggcat 350
Query: 481 ttggtatttctgtg 494
||||||||||||||
Sbjct: 349 ttggtatttctgtg 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
