XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGCATCCGCGGAATTC
AGTTTACTTACCAAAAAGATGCTTAATTTTTAAAGTGGCCATATTTGGAA
AAGGACATTTTTCAATATATGTACATGCATATTTACATGCTTATATGTAG
TAATTTATTTATATGTTTATATATGCATATAGCAAATAAGTTTAACTAAT
TATTTCATTACTTTTTGATGAATGACATAATTATGTCAAAATATCTTCTA
TAGATGCATGGCTTATAATAAGAAACTTGGTTGTTTCAAGTTGAGTACCT
TAGCACCCCCTTTTACTCTTTATTCCCCAAGCTAGATTGTTTCCTCTTAC
TCAAAGTCACTCTGTCCATTCATATTTGAAATTAAAATAAAGATTTTATT
TTTATGAACCCCCTTGCTCTTCATTCCAGGATGCAGAATGCTGAACAGTT
AAATCTTTTAACATCTCACCTCTGGGCCTAGCAGGCTTCTTTCAGCATTC
CAACATGGATTTCTGAGTGTGGACTCTGAGTCATCTCTCCTCCAGCTAAA
CACTACTTCTGCACTACACTTAGTCTGGTCTTGCAGAATTTTCCACACAC
CATTGCTCTCCTGTGACTGGTAATCACTGCTTGGTTTCAATGAACTACAT
CATTTTGTATTTTTCCTCTTTTCTTTGGCCCCTCCCCAAGTCTCATCCAT
GGTGTGTGGCCGGAACTCTTTCTACCACGGAGAAAGACAAAACACCCTTT
GG

TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCAGAGAGCTGAGGGTTGAGAGATGCTAAGG
ACCCAAAGGGAGGGACCTTAGATAAAATGCTAGACAGTAGGGCAAAGGAA
CTTATAGAACCCATCTCCAGCAGAAAGACGAGGCATCAAGTGAGGGATGG
AGATGCCATCCCATAGTCACAACTCTGACCCATAATTGTTCCTATCTGAA
AGAACTGCAGGGATGGAAATGGAGAGGGACCTAAGGAAAAGAAGATCCAG
CAACAGGCCTGATTTTGGAAACCAGCTCAAGGGGAGGTCCCAAGGCTTGA
CAAAATTATTGAGGCTATAGAGTGTTCACAAAAAAAGGACCTAACATGAC
CATACTTTGAAGACCCAACAAGCAACTGAATGAGTCAGATGCAGATATTG
GCACCCAACCAATGGACAGAAGCAGCTGACTCCTGTTGTTGAATTAGGGA
AAGCTGAAAGAAGCTGATAAGGGCAACCCTGTAAGAATACCAGCAGTTTC
TATTAACCTGGATCCTCAATATCTCTCAAACACTGGACCACCAAACAGAC
AGCATACACCAGCTGATATGACGCCCCCCACCCATATATAGTATAGAATT
ACTGGGGTCTGGGTTTCCGTCAGGGAAAGATGCACCTACACCCTTCTGAG
ACAGGGATGTCTTCTCGAACTTTATTTTCCGGCTCGCGCGGN

Query= MSMg01no439_h15.b1 MSMg01no439_h15.b1 CHROMAT_FILE:
MSMg01no439_h15.b1 PHD_FILE: MSMg01no439_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:36 2005
         (544 letters)



>mm_chr4_78829086_78830029
          Length = 944

 Score = 1013 bits (524), Expect = 0.0
 Identities = 539/544 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcttaatttttaaagtggccatatttggaaaaggacatttttcaatatatgtacatgcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gcttaatttttaaagtggccatatttggaaaaggacatttttcaatatatgtacatgcat 796

                                                                       
Query: 61  atttacatgcttatatgtagtaatttatttatatgtttatatatgcatatagcaaataag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 795 atttacatgcttatatgtaggaatttatttatatgtttatatatgcatatagcaaataag 736

                                                                       
Query: 121 tttaactaattatttcattactttttgatgaatgacataattatgtcaaaatatcttcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 735 tttaactaattatttcattactttttgatgaatgacataattatgtcaaaatatcttcaa 676

                                                                       
Query: 181 tagatgcatggcttataataagaaacttggttgtttcaagttgagtaccttagcaccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tagatgcatggcttataataagaaacttggttgtttcaagttgagtaccttagcaccccc 616

                                                                       
Query: 241 ttttactctttattccccaagctagattgtttcctcttactcaaagtcactctgtccatt 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttactctacattccccaagctagattgtttcctcttactcaaagtcactctgtccatt 556

                                                                       
Query: 301 catatttgaaattaaaataaagattttatttttatgaacccccttgctcttcattccagg 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 555 catatttgaaattaaaataaagattttatttttatgaacccccttgatcttcattccagg 496

                                                                       
Query: 361 atgcagaatgctgaacagttaaatcttttaacatctcacctctgggcctagcaggcttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atgcagaatgctgaacagttaaatcttttaacatctcacctctgggcctagcaggcttct 436

                                                                       
Query: 421 ttcagcattccaacatggatttctgagtgtggactctgagtcatctctcctccagctaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttcagcattccaacatggatttctgagtgtggactctgagtcatctctcctccagctaaa 376

                                                                       
Query: 481 cactacttctgcactacacttagtctggtcttgcagaattttccacacaccattgctctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 cactacttctgcactacacttagtctggtcttgcagaattttccacacaccattgctctc 316

               
Query: 541 ctgt 544
           ||||
Sbjct: 315 ctgt 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)