BAC Information

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BAC

Clone NameMSMg01-439P11
Chromosome4 (Build37)
Map Location 127,691,382 - 127,691,758
singlet/doubletsinglet
Overlap genenone
Upstream geneSfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296, LOC635169
Downstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439P11.T7 (MSMg01no439_p11.b1)MSMg01-439P11.TJ (MSMg01no439_p11.g1)
ACCAG530194AG530195
length791726
length of high quality
(start - end)
376 (72 - 447)95 (165 - 259)
definitionCHROMAT_FILE: MSMg01no439_p11.b1 PHD_FILE: MSMg01no439_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:13 2005CHROMAT_FILE: MSMg01no439_p11.g1 PHD_FILE: MSMg01no439_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGACTTTCAGAACTACACAGAGAAACCCTGTCTTGAAAAACAAAGA
AACAAACAAATCAAGACAAAAATGCCATCAAGTGTACCTGAGAGTTCTTA
GTGACTTTCCACTGTGTGTCTGATATTCTAGAAGTCTTGTTAAAAATGCA
AGTTTCAGGGTCTAATTGTTCATGGCTCAGCAGGCCAGGTGCTGGTTATG
TCTGCTGGAGAACAGGTTTTGAGTGTGGTCAGGGGATTTGCCTGTCTTTC
CCTTCCAGTGGGTCAGATCATTATTTTGGGTCCCTCTCCCTGTGTCCCCA
GGAGTGTTTGTGGAACTTTTCAATCTGATGCATACCAGATAGGAATCGCA
GTCTTGTGTTATTTTAATTATAACGGAAACCAAACATCGTGTGTGTGTGT
GTGCGTGTGTGTGTGTGTGTTTGTCCATTTTTCTTCTCATCTTTTCTCAT
CACCTTCCACTTCTCCCTTTTCTCTCTTCCTCTCTCTCTTTTTACCCCCC
TTTCCCCCCCCTTTTTTTCCCTTCCTTCCTTTTTTTCCCTTATTCATTCC
TTCTTCTCCCACTTTTATATTTTCCCCTCCTTTTTCCCCCCATATATTCC
CTTTTTTCTTTTTTTTTTCTTTCACCCTCCTTATATATAACTACTCCCTT
CTTTCTCTTCCATTAATCTACCTTTATTCTATCTCTTTTCTCCTTCTCTT
CATCCTCCCCTTCCTTTTTCCCTTTCCATTCTCCCTTTTCC
ACATGGGGAGGCCGGGGGCGCCTGTTTCAGACTGGGGGNGAANCANAGAA
TTTCACCGACAAGTCTGACTGCCACTGACTGACTGGGGGAACTCAGGTGA
GCTTCCTGACCCCTTCCTTCTAGAAAGGGGATGTTAAGGATGCTCAACAC
GACAAAGATTAGGTAAATGAGAAGAGAGGATATGAAGGCTATGAAGAACT
CAGCACGATGCTTCGCACCTAAAGCCAACAGGCGAGTTTTCACCCAGGGC
TTGCATGATGTTCAAAGTGCTTTGCAAGCACCGAGATATTTCATCTGTAC
AATTTTTCTTTGGGATCCCATTATCCCACATTTTTAAATGAGATATCTGG
CGCTCCACAGTCAGGTAAATTGCTCAGGGTCGATGGCTGGTCAGTGGTTG
CCGAGCAAGCACAGACTGCGACCTCATGTAACCCACAGATTATGACTTAA
CTAACTCAGTGTCATCCTCCCTACCCCTATTATCCCCCATTACCCCCCAT
CCGACCGTTCCGCGTTCCCCCCCCTCGACTTATGCTTTCTTCTGCTTTAT
TGGCCCACACCTCGATGCCTTCCCCTTTGTTTTCTCTTTCCATGTTCCCC
GCTTCTCTCACGCCGCCCCCCTCTTCTTGTCTTACCTTTTCCACCCCCCC
CTTATCCATCATTCCCCCCTTTTTCCTCCTCTTTTTCCCCTCCTTTTTGT
TCCTCCCTTTTTATCTCCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_p11.b1 MSMg01no439_p11.b1 CHROMAT_FILE:
MSMg01no439_p11.b1 PHD_FILE: MSMg01no439_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:13 2005
         (376 letters)



>mm_chr4_127691182_127691958
          Length = 777

 Score =  644 bits (333), Expect = 0.0
 Identities = 366/377 (97%), Gaps = 1/377 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaaaccctgtcttgaaaaacaaagaaacaaacaaatcaagacaaaaatgccatcaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaaaccctgtcttaaaaaacaaagaaacaaacaaatcaagacaaaaatgccatcaa 260

                                                                       
Query: 61  gtgtacctgagagttcttagtgactttccactgtgtgtctgatattctagaagtcttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtacctgagagttcttagtgactttccactgtgtgtctgatattctagaagtcttgtt 320

                                                                       
Query: 121 aaaaatgcaagtttcagggtctaattgttcatggctcagcaggccaggtgctggttatgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aaaaatgcaagtttcagggtctaattgttcatggctcagcaggccaggtgctgggtatgt 380

                                                                       
Query: 181 ctgctggagaacaggttttgagtgtggtcagggg-atttgcctgtctttcccttccagtg 239
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ctgctggagaacaggttttgggtgtggtcagggggatttgcctgtctttcccttccagtg 440

                                                                       
Query: 240 ggtcagatcattattttgggtccctctccctgtgtccccaggagtgtttgtggaactttt 299
           |||| || ||  |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 ggtctgagcagcattttgggtccctctccctgtgtccccaggagtgtttggggaactttt 500

                                                                       
Query: 300 caatctgatgcataccagataggaatcgcagtcttgtgttattttaattataacggaaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatctgatgcataccagataggaatcgcagtcttgtgttattttaattataacggaaac 560

                            
Query: 360 caaacatcgtgtgtgtg 376
           |||||||| ||| ||||
Sbjct: 561 caaacatcatgtttgtg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space:   281856
Effective search space used:   281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)