Query= MSMg01no440_a03.b1 MSMg01no440_a03.b1 CHROMAT_FILE:
MSMg01no440_a03.b1 PHD_FILE: MSMg01no440_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:16 2005
(625 letters)
>mm_chr4_86472321_86473349
Length = 1029
Score = 1102 bits (570), Expect = 0.0
Identities = 610/628 (97%), Gaps = 12/628 (1%)
Strand = Plus / Minus
Query: 2 tacaactctttttttctatacgataagtagtttttctatttgtattttcacaaaaagaaa 61
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 624 tacaactctttttttctatacggtaagtagtttttctatttgtattttcacaaaaagaaa 565
Query: 62 atctaatgatttagtctattcacagcactaagctgcagggatttcaaggatagtaaggca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atctaatgatttagtctattcacagcactaagctgcagggatttcaaggatagtaaggca 505
Query: 122 gt--accacaggcaaagagctctgtaaaaatggaagtgcccaaggaaagaggggtggtaa 179
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 gtacaccacaggcaaagagctctgtaaaaatggaagtgccc-aggaaagaggggtggtaa 446
Query: 180 acacaagcaaaccaacgctgaa------gaggaaggaggagaagaaccctcaagtctgcc 233
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 445 acacaagcaaaccaacgctgaagaggctgaggaaggaggagaagaaccctcaagtctgcc 386
Query: 234 tgctctgtacattatctccccatctctcaaatcccagcagagaaagtgaaatgtcatgca 293
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 tgctctgtacattatctccccatctctcaaaccccagcagagaaagtgaaatgtcatgca 326
Query: 294 tatgtaacaatgatgtttttttataatttcaaatactataggtgctttcaaaagttttaa 353
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 tatgtaacaatgatg-ttttttataatttcaaatactataggtgctttc--aagttttaa 269
Query: 354 tttagacttatttatggaattataaagcgattctaaagttatttttattggttcattttt 413
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 tttagacttatttatggaattataaagtgattctaaagttatttttattggttcattttc 209
Query: 414 atttaaatttatttaattttatgtgcatgggatatatgtctgcactatctgcatgtagca 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 208 atttaaatttatttaattttatgtgcatgggatatatgtctgcactatctgcatatagca 149
Query: 474 catgtggaggtcagaagatcgtgtaagatcctctggaactggagttacagatggttgtga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 catgtggaggtcagaagatcgtgtaagatcctctggaactggagttacagatggttgtga 89
Query: 534 gctgctacgtggtactgggaactgaacccaggtcctctgtaagagcagccatcttaacca 593
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gctgctacgtggtactgggaattgaacccaggtcctctgtaagagcagccatcttaacca 29
Query: 594 ctcggccatctctctagcctcctatttt 621
||||||||||||||||||||||||||||
Sbjct: 28 ctcggccatctctctagcctcctatttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1029
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1019
Effective search space: 626685
Effective search space used: 626685
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_a03.g1 MSMg01no440_a03.g1 CHROMAT_FILE:
MSMg01no440_a03.g1 PHD_FILE: MSMg01no440_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:16 2005
(550 letters)
>mm_chr4_86293964_86294913
Length = 950
Score = 1048 bits (542), Expect = 0.0
Identities = 548/550 (99%), Gaps = 1/550 (0%)
Strand = Plus / Plus
Query: 1 tataaaatgacacaggatgcataacaagatctcttacgaaagttcacatcatttacaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaaatgacacaggatgcataacaagatctcttacgaaagttcacatcatttacaact 260
Query: 61 aagatcaagcagccaaacagtagatgaatgttcaccaaagacacaggaataaaacagagg 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagatcaagcagccaaatagtagatgaatgttcaccaaagacacaggaataaaacagagg 320
Query: 121 caaccatttaaaaaaaaaaagatatatattacattttcaataaaatagtgtctttccttg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaccatttaaaaaaaaaa-gatatatattacattttcaataaaatagtgtctttccttg 379
Query: 181 tgttagttgggtggtcttttgccttaagaggacagggctgtgagtgtgtggtcattgggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgttagttgggtggtcttttgccttaagaggacagggctgtgagtgtgtggtcattgggt 439
Query: 241 tcaatcatccgcttccaacggaataatatcaggaacttcgtcagtgtcagatgtcgagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaatcatccgcttccaacggaataatatcaggaacttcgtcagtgtcagatgtcgagtc 499
Query: 301 agcagcagggaagtcaagcatctgtaagagaagaagctcagatgttaccacatacgccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcagcagggaagtcaagcatctgtaagagaagaagctcagatgttaccacatacgccct 559
Query: 361 cttcttggcgatgactgcggtcaaaagaacaggcagttaggacgtgaacgtcagatccaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttcttggcgatgactgcggtcaaaagaacaggcagttaggacgtgaacgtcagatccaa 619
Query: 421 agcagctcctcacgcctccacccttgagtgctgagaacatagacagtgccgccaccacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agcagctcctcacgcctccacccttgagtgctgagaacatagacagtgccgccaccacac 679
Query: 481 ggaaacctccctttcccagttcaccgctagagcagactctgtaaaatactttcttgtgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggaaacctccctttcccagttcaccgctagagcagactctgtaaaatactttcttgtgtg 739
Query: 541 ccaggggctc 550
||||||||||
Sbjct: 740 ccaggggctc 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
