Query= MSMg01no440_a08.b1 MSMg01no440_a08.b1 CHROMAT_FILE:
MSMg01no440_a08.b1 PHD_FILE: MSMg01no440_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:17 2005
(579 letters)
>mm_chr4_51198658_51199639
Length = 982
Score = 1040 bits (538), Expect = 0.0
Identities = 565/575 (98%), Gaps = 3/575 (0%)
Strand = Plus / Minus
Query: 1 ctggagtgagtgaggtaatcatgtgactgcacccttttgttcacagtgtaagaagctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctggagtgagtgaggtaatcatgtgactgcacccttttgttcacagtgtaagaagctaga 716
Query: 61 agtgtcattgctcagtatgatggcatattaacaaatggtacgaactttttcacattggcc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 715 agtgtcattgctcagtatgatggcatattaacaaatggtatgaactttttcacattggcc 656
Query: 121 catcagttttgctaagaatgatgttattttcattaatgttacctaatttttttcttcctg 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 catcaattttgctaagaatgatgttattttcattaatgttacctaatttttttcttcctg 596
Query: 181 ctttcaaatatcttacacagacacagactgacagaaaaacattagaagaccttgaatatt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 595 ctttcaaatatcttacacagacacagactgacagaaaaccattagaagaccttgaatatt 536
Query: 241 ccttatagaaatctaatccagccaatcataccagagctcagttgctacttatttggtgat 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccttatagaaacctaatccagccaatcataccagagctcagttgctacttatttggtgat 476
Query: 301 attctatgtagacttttatgtcagtgagtttttattcaacactagtcattatcacttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 attctatgtagacttttatgtcagtgagtttttattcaacactagtcattatcacttatt 416
Query: 361 ttaatgtaattttagacagcatagcatt--aaaaaac-ttttttcatagaggaattatac 417
|||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct: 415 ttaatgtaattttagacagcatagcattaaaaaaaacttttttttatagaggaattatac 356
Query: 418 ccttttaaaggatagttaagggtctgcaaagacatgcacaaattgattgtcttgtgagca 477
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 355 ccttttaaaggatagttaagggtctgcaaagacatgcacaaagtgattgtcttgtgagca 296
Query: 478 tgaagaataggcttcagattcccagaactcataanagccaggaaggcatgctaactgact 537
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 295 tgaagaataggcttcagattcccagaactcataaaagccaggaaggcatgctaactgact 236
Query: 538 gtctttgaagcactatgaaggccgagtcaaaaaaa 572
|||||||||||||||||||||||||||||||||||
Sbjct: 235 gtctttgaagcactatgaaggccgagtcaaaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 982
Length adjustment: 10
Effective length of query: 569
Effective length of database: 972
Effective search space: 553068
Effective search space used: 553068
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_a08.g1 MSMg01no440_a08.g1 CHROMAT_FILE:
MSMg01no440_a08.g1 PHD_FILE: MSMg01no440_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:18 2005
(496 letters)
>mm_chr4_51065640_51066534
Length = 895
Score = 886 bits (458), Expect = 0.0
Identities = 486/496 (97%), Gaps = 1/496 (0%)
Strand = Plus / Plus
Query: 1 tccacacaaatgaaaaaagccaatatctttcactgtaccctcatatatgtatatatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacacaaatgaaaaaagccaatatctttcactgtaccctcatatatgtatatatcttg 260
Query: 61 gaataactctgacaaagcaagtaaaaactcatgtaagatttcttggatgggtgggatggt 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 gaataactctgacaaagcaagtaaaaactcatgtaagacttcttggatgggtgggatggt 320
Query: 121 gagcatctgtgaggagatgaaggaaaggaaattcatgatcagaatatattatatgaaaat 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcatctgtgagtagatgaaggaaaggaaattcatgatcagaatatattatatgaaaat 380
Query: 181 tatgtttaataaaaaggtagatgatgaaaacacagtgttgtatcatttctgttgtgtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtttaataaaaaggtagatgatgaaaacacagtgttgtatcatttctgttgtgtttt 440
Query: 241 atagtgttttattttttctgtgctactgaaggnattatagttctgctatttcctctcttg 300
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 441 atagtgttttactttttctgtgctactgaaggtattgtagttctgctatttcctctcttg 500
Query: 301 cagcaaaaactgttcttcaattacgccaacttttcaccagaggatgcccaattccatgta 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 cagcaaaaactgttcttcaattacgccaacttttcaccagaggatgtccaattccatgta 560
Query: 361 tgagtgcaatctgctacatttcggattatatttcttgtatcttataatattagntaagtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tgagtgcaatctgctacatttcggattatatttcttgtatcttataatattagttaagtc 620
Query: 421 cttaattagtgtcaacactatgatatgttaatataaaattatactaagattcctcacaga 480
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 621 cttaattagtgtcaacactatgatatgttaatattaaattatactaagattcctcaaaga 680
Query: 481 gagtattttatgctta 496
|||||||| |||||||
Sbjct: 681 gagtattt-atgctta 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 895
Length adjustment: 10
Effective length of query: 486
Effective length of database: 885
Effective search space: 430110
Effective search space used: 430110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
