Query= MSMg01no440_l12.b1 MSMg01no440_l12.b1 CHROMAT_FILE:
MSMg01no440_l12.b1 PHD_FILE: MSMg01no440_l12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:16 2005
(371 letters)
>mm_chr4_29004584_29005354
Length = 771
Score = 667 bits (345), Expect = 0.0
Identities = 348/349 (99%)
Strand = Plus / Minus
Query: 23 atgcatgccttatctttgttgtctgatatgatgtgcgttaacctccatatagaccacatc 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atgcatgccttatctttgttgtctgatatgatgtgcgttaacctccatatagaccacatc 512
Query: 83 aaagacacatggccataagcctgctcacttaacaatgaagcatttgttaattatccagca 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaagacacatggccataagcctgctcacttaacaatgaagcatttgttaattatccagca 452
Query: 143 tacatatgtatttaaaatttcaagtctatctccatgaagccaaccacatgatcatagaaa 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tacatatgtatttaaaatttcaagtctatctccatgaagccaaccacatgatcatagaaa 392
Query: 203 gtatccactttgtccaagttacatgtgtgtagctggtgcttatcacccataatattaagg 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gtatccactttgtccaagttacatgtgtgtagctggtgcttatcacccataatattaagg 332
Query: 263 ttattttaacatgaagataataagaaagttaaactctggctgttctatcagatctcatca 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctattttaacatgaagataataagaaagttaaactctggctgttctatcagatctcatca 272
Query: 323 ctcttaactttatgatatggtaaatgttgctacagcattttcttaagac 371
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ctcttaactttatgatatggtaaatgttgctacagcattttcttaagac 223
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_l12.g1 MSMg01no440_l12.g1 CHROMAT_FILE:
MSMg01no440_l12.g1 PHD_FILE: MSMg01no440_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:16 2005
(517 letters)
>mm_chr4_28826009_28826930
Length = 922
Score = 851 bits (440), Expect = 0.0
Identities = 502/524 (95%), Gaps = 9/524 (1%)
Strand = Plus / Plus
Query: 1 ttttagaaattcagtactgagttcactactaaagttttgttgaacttgaagcaagccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttagaaattcagtactgagttcactactaaagttttgttgaacttgaagcaagccctc 260
Query: 61 tgcctggttcacactgacagagaacccttccctgacccttctctgtgcttcccaacactg 120
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctggttcacactgacagagaagccatccctgacccttctctgtgcttcccaacactg 320
Query: 121 ggactattggcgtgcaccactgcacactcctcagattaaatctttatttgaattttcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactattggcgtgcaccactgcacactcctcagattaaatctttatttgaattttcatt 380
Query: 181 -tatatcaaaatgtttttctaagcttttactaagtctggataacattccgacatgacaag 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 381 gtatatcaaaatgtttttctaagcttttactaagtctggataacattccgacatggcgag 440
Query: 240 gcttcttgtagttagagacctcctttattaaagcatgtctgagtgaaatgaaactgccac 299
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 gctgcttgtagttagagacctcctttattaaagcatgtctgaatgaaatgaaactgccac 500
Query: 300 acacatatcccgtccactgcactttctatacatttgcaaga---tga-gctaatcagg-g 354
||||||||||| ||| ||||||||||||||||||||||||| ||| | ||||| || |
Sbjct: 501 acacatatcccatccgctgcactttctatacatttgcaagaagatgaag-taatc-ggtg 558
Query: 355 aaatgggtccacgatttttcctttaagtgaaattttca-taagaatacaaaattcattct 413
||||||||||| |||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct: 559 aaatgggtccatgatttttcctttaaattaaattttcactaagaatacaaaattcattct 618
Query: 414 agagatttggccacaaagccaatttttatctactgtgatctttcttattgcaaaacgtca 473
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 agagatttggccacaaagccaatttttacctactgtgatctttcttattgcaaaacgtca 678
Query: 474 cctcatttaaatatatgcaattaaccaccacttctgctttctgt 517
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 679 cctcatttaaatatatacaattaaccaccacttctgctttctgt 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 922
Length adjustment: 10
Effective length of query: 507
Effective length of database: 912
Effective search space: 462384
Effective search space used: 462384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
