Query= MSMg01no441_a03.b1 MSMg01no441_a03.b1 CHROMAT_FILE:
MSMg01no441_a03.b1 PHD_FILE: MSMg01no441_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:38 2005
(590 letters)
>mm_chr4_45868788_45869774
Length = 987
Score = 886 bits (458), Expect = 0.0
Identities = 556/594 (93%), Gaps = 12/594 (2%)
Strand = Plus / Plus
Query: 1 gccgtgagcctggctgtaactgatgccaagggctggttttcagtggggagaggaggagga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gccgtgagcctggctgtaactgatgccaagggctggttttcagtgggga---gaggagga 257
Query: 61 ggagagcgttctgccagctggggcccctcagtggctgaccccaagtgctacttctggtct 120
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 258 ggagagcgttctgccagctggggcccttcagtggctgaccccaagtgctacatctggtct 317
Query: 121 ggccattgcccttctctctgtgacccatgcatcatactcctggagaggcaaatagatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggccattgcccttctctctgtgacccatgcatcatactcctggagaggcaaatagatggt 377
Query: 181 aagggctgggagtgtgtgtgtgtgcgcgtgcacacacgcgtgcgcgcgtacacgccattg 240
||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 378 aagggctggga--gtgtgtgtgtgcgcgtgcgcacacgcgtgcgcgcgtacacgttattg 435
Query: 241 tgaccatgtgtatgtcagaggacgatttgcaggagttccttctcttctttcaccatatgg 300
|||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 tgaccatgtggaagtcagaggacgacttgcaggagttccttctcttctttcaccatatgg 495
Query: 301 accctggggattgaactcaggttgttaggcttggtggcaagcccctttcccagctgaata 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 accctggggtttgaactcaggttgttaggcttggtggcaagcccctttcccagctgaata 555
Query: 361 tctcaatggccctgctcttgctccctgagtgggtgtgaagcttgttccatgaggccctgc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 556 tctcaatggccctgctcttgctccctgagtgggtgtgaagcttgttccatgaggtcctgt 615
Query: 421 tgtctactctacggtcctgctggtcttttctctttgatcttgtctcagctctctgacaat 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtctactctacggtcctgctgatcttttctctttgatcttgtctcagctctctgacaat 675
Query: 481 tcccttttgctttcaagtatggcttcttccctccctccctccctcccttccttccttcct 540
|||||||||||||||||||||||||||||||| ||||| || ||| ||| ||| ||
Sbjct: 676 tcccttttgctttcaagtatggcttcttccct---tccctttctttctttctttctttct 732
Query: 541 tccttccttccttccttccttccttccttcct----tccttccttccttccttc 590
| ||| ||| ||| ||| ||| ||| |||||| ||||||||||||||||||
Sbjct: 733 ttctttctttctttctttctttctttcttcctatcttccttccttccttccttc 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 987
Length adjustment: 10
Effective length of query: 580
Effective length of database: 977
Effective search space: 566660
Effective search space used: 566660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_a03.g1 MSMg01no441_a03.g1 CHROMAT_FILE:
MSMg01no441_a03.g1 PHD_FILE: MSMg01no441_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:38 2005
(114 letters)
>mm_chr4_46043333_46043846
Length = 514
Score = 207 bits (107), Expect = 2e-58
Identities = 110/111 (99%)
Strand = Plus / Minus
Query: 1 acatccatccttgtctgcacctcgtcccccaactgccccacatatggggtacaaaaggcc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acatccacccttgtctgcacctcgtcccccaactgccccacatatggggtacaaaaggcc 252
Query: 61 agggcctcaggcagcagcgaaggcatcaagtggctcaaggaggctgcaagg 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agggcctcaggcagcagcgaaggcatcaagtggctcaaggaggctgcaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space: 53636
Effective search space used: 53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
