Query= MSMg01no441_b07.b1 MSMg01no441_b07.b1 CHROMAT_FILE:
MSMg01no441_b07.b1 PHD_FILE: MSMg01no441_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:44 2005
(570 letters)
>mm_chr4_118800077_118801046
Length = 970
Score = 920 bits (476), Expect = 0.0
Identities = 537/568 (94%), Gaps = 18/568 (3%)
Strand = Plus / Minus
Query: 21 aaagttctagggtcacctgttccatccagctactgccctcagtgtccatctgggagaaag 80
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 aaagttctagggccacctgttccatccagctactgccctcagtgtccatctgggagaaag 901
Query: 81 gtgtcctgcagggacagaatgcctgctgactactcccctcacaggatcccagcagtagct 140
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 900 gtgtcctgcagggacagaatgcctgctgactactcccctcataggatcccagcggtagct 841
Query: 141 gcctgtcctatcccttgtgccaatcacaagcccaaatgttatccctgatgctgccactgt 200
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 840 gcctgtcctaccccttgtgccaatcacaagcccaaatgttatccctgacgctgccactgt 781
Query: 201 gcccaacccaaacgtcccaggtctgctgaatgtgccttcccaccagtctcctgtgctgtg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gcccaacccaaacgtcccaggtctgctgaatgtgccttcccaccagtctcctgtgctgtg 721
Query: 261 tggcatctgtcctaggtccctc-------ctgtgttctgttgcagtctttcacccccaaa 313
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 720 tggcatctgtcctaggtccctcctgtgttctgtgttctgttgcagtctttcacccccaaa 661
Query: 314 gcaatgcctttacatgggtaatgaactagcacagtcctccactcttccttgtctggaaca 373
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 660 gcaatgcctttacatgggtaatgaactagcacagtcctccactcttccttgtagggaaca 601
Query: 374 tctgaagcaaactgacctagaccagttacaggtgacagtctgggttcaacaggcctcctg 433
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 600 tctgaagcaaactgacctagaccagttagaggcgacagtctgggttcaacaggcctcctg 541
Query: 434 ggaagggctggagccacacatggctcgcacttgcttttcagagaatccttttacag---- 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaagggctggagccacacatggctcgcacttgcttttcagagaatccttttacagtgta 481
Query: 490 -------tgggctggagctgtgctgcaacctgacttctcttgcagattctgttctcagca 542
||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct: 480 gaaccactgggctggagctgtgatgcaacctgacatctcttgcagattctgttcccagca 421
Query: 543 cccagtggcagctcacagccacctgcaa 570
|||| |||||||||||||||||||||||
Sbjct: 420 cccaatggcagctcacagccacctgcaa 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_b07.g1 MSMg01no441_b07.g1 CHROMAT_FILE:
MSMg01no441_b07.g1 PHD_FILE: MSMg01no441_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:44 2005
(442 letters)
>mm_chr4_118602573_118603414
Length = 842
Score = 727 bits (376), Expect = 0.0
Identities = 417/442 (94%), Gaps = 18/442 (4%)
Strand = Plus / Plus
Query: 1 aggatgacagtagctgctggaacctgcacaatcacacaacagctctggtgagcatgagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgacagtagctgctggaacctgcacaatcacacaacagctctggtgagcatgagag 260
Query: 61 acacacagaggctctaagcagggacgtgataatggtggaggagtttttagagcctgcagt 120
|||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| |
Sbjct: 261 acacacagaggctctaagcaaggacatgataatagtggaggagtttttagagcctgcact 320
Query: 121 atctgtagaacaatatttttaaacaggcagagctaatgggaagatgcttttagatagagg 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 atctgtagaacaacatttttaaacaggcagagctaatgggaagatgcttttagacagagg 380
Query: 181 tgtcatgaaattagaaggaaaatggtgaaatgatggatgaggtgacaaagcttatgggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcatgaaattagaaggaaaatggtgaaatgatggatgaggtgacaaagcttatgggag 440
Query: 241 cactaggagagtgtggctataggaaacatgtcattgctgagtagggctggccctctgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactaggagagtgtggctataggaaacatgtcattgctgagtagggctggccctctgcct 500
Query: 301 accatgggcccgggcaagctggaccgcctccagcctggagcctccacactgcttgtactt 360
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 accatgggcc------------------tccagcctggagcctccacactgcttgtactt 542
Query: 361 ctggtagaaggacagtgttggacaagatggagaatggcttattgtctcaactgggtagcc 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 543 ctggtagaaggacagtgttggacaagatggagaatggcttattgtctcaattgggtagcc 602
Query: 421 ctgaaaaaacaccatagtctgt 442
||||||||||||||||||||||
Sbjct: 603 ctgaaaaaacaccatagtctgt 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
