BAC Information

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BAC

Clone NameMSMg01-441G12
Chromosome4 (Build37)
Map Location 115,625,078 - 115,799,588
singlet/doubletdoublet
Overlap geneFaah, Nsun4, Uqcrh, Lrrc41, Rad54l
Upstream geneCmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1
Downstream gene1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441G12.T7 (MSMg01no441_g12.b1)MSMg01-441G12.TJ (MSMg01no441_g12.g1)
ACCAG531295AG531296
length764750
length of high quality
(start - end)
533 (81 - 613)479 (79 - 557)
definitionCHROMAT_FILE: MSMg01no441_g12.b1 PHD_FILE: MSMg01no441_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:10 2005CHROMAT_FILE: MSMg01no441_g12.g1 PHD_FILE: MSMg01no441_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,799,224 - 115,799,588)(115,625,078 - 115,625,556)
sequence
NTTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAACAGGATCCGC
GGAATTCTTTTTTACATCTTAAAAATTTCATTTCAAATGTTATGTTTTGC
CTGCATGTATAGACATCTGTATACCACATTTGCGCCTAGTGCCTACAGAG
GCCAAAAGAAGGTATTGGGTCCCCTGGAACTAGAGTTACAGACAGTTGTG
AGCCACCATGTGGGTGCTTGGAATTGAATTTGGTCCTCTGGAAAAGCAGC
CAGCCCTCTTATCTCTGAGCCATCTCTTCAGCCTCCTAGCTGGATTTTTA
AATTTTTTTATTTTCAGTGTTTGGGTTTCTCTATGTAGCCTGGCTCTCCT
GGAACTAGCTCTGTGGACCAGGCTGGCTTTAAACTCAGAGATATTTGCTT
GCCTCTGCCTTCAGAGTGCTGGGATTAAAGGCGTGCACCACCACACCCAC
TCCTAGCTGTACTATTTGATTCTTGGCTGGTTAGAGACTTCACAGATCCC
AGGGGATGGGGCTCCTTTCCTTTCTCTCATGTTTCCATGATTTTCCTGTC
TTTCTAGTCTGCCTCTTCTATAGCTAGGCATGATGTTGAAGCCCTGTAAT
CCTAGCTTTCAGGAGGCTGAGGCAGGAGGATCTTCAATGAGTTCTAGACC
AGACCAAGCTACATAGGGAGATGTCTGCCTATGACTCCCCACAGAACAAA
AACAAAACCCCACCTAAACCAGAATAACAAAACCCTAACCCCCTAAAAGC
CCTGTGGAAAAAAN
NCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGCCCACAACACTGCCTG
TAGAGAGCAGGAAGGACTGATTCTCAGGGGGTTGTGGTGGAGGTCTCTAC
TACCTACCTCTCCCCAAATGGCTAACCTCCCTTAGGACTGAGGTAAGTGT
AAATGATACTCTCCAGGGAACCAGTACCACTTGCTTGGAGAATCCAAAGC
CCCTGGGTTATTAGTGTTTGCAGGATACAGGTAAATAAATTGCATGGTAT
GGCATAGTAGAACATGTCTATTTTTCAGAATTCAGAAGAGATGGAAGCAG
GAGGATCAGGAGTTCAAGGCTAATGTGGGCCACATAAACCCTTGAATCAA
AACAAATGAACAAAAGACTTAGGGAGCGTGTGAAGGTTTCTTTTAAAACC
TAACAACCTAAGGCAGCATCAGACCAGGACAAGCCCACCCCTGGTGAGGA
CACTCTAGGTTTCCTTACAGCACACTCCTTGGGTAGATACAGCTCCTGAG
ACTAGAGACAAACGAGAAGTACCAGGGATTCTGCGCCCTCTGCTGTCAGA
TTTTCAGAAATGCATTCTTCCCGACGAGCCCAGCCAAGTTTTCTCTGCAT
CCTCCCGAGATGCAGGCTTCTTCCTCTGCCCTGGAAGTCCTAAGGTTGGA
TCACATAACCCTTATTTTCCCGGGCCATAATCCCTTATATGTAGCTGGGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_g12.b1 MSMg01no441_g12.b1 CHROMAT_FILE:
MSMg01no441_g12.b1 PHD_FILE: MSMg01no441_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:10 2005
         (533 letters)



>mm_chr4_115798656_115799588
          Length = 933

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 169 gccagccctcttatctctgagccatctcttcagcctcctagctggatttttaaatttttt 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gccagccctcttatctctgagccatctcttcagcctcctagctggatttttaaatttttt 874

                                                                       
Query: 229 tattttcagtgtttgggtttctctatgtagcctggctctcctggaactagctctgtggac 288
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 tattttcagtgaaagggtttctctatgtagcctggctctcctggaactagctctgtggac 814

                                                                       
Query: 289 caggctggctttaaactcagagatatttgcttgcctctgccttcagagtgctgggattaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 caggctggctttaaactcagagatatttgcttgcctctgccttcagagtgctgggattaa 754

                                                                       
Query: 349 aggcgtgcaccaccacacccactcctagctgtactatttgattcttggctggttagagac 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aggcgtgcaccaccacacccactcctagctgtactatttgattcttggctggttagagac 694

                                                                       
Query: 409 ttcacagatcccaggggatggggctcctttcctttctctcatgtttccatgattttcctg 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttcacagatcccaggggatggggctcctttcctttctctcatgtttccatgattttcctg 634

                                                                       
Query: 469 tctttctagtctgcctcttctatagctaggcatgatgttgaagccctgtaatcctagctt 528
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tctttctagtctgcctcttccatagctaggcatgatgttgaagccctgtaatcctagctt 574

                
Query: 529 tcagg 533
           |||||
Sbjct: 573 tcagg 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no441_g12.g1 MSMg01no441_g12.g1 CHROMAT_FILE:
MSMg01no441_g12.g1 PHD_FILE: MSMg01no441_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:10 2005
         (479 letters)



>mm_chr4_115624878_115625756
          Length = 879

 Score =  895 bits (463), Expect = 0.0
 Identities = 475/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggcccacaacactgcctgtagagagcaggaaggactgattctcagggggttgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggcccacaacactgcctgtagagagcaggaaggactgattctcagggggttgtggt 260

                                                                       
Query: 61  ggaggtctctactacctacctctccccaaatggctaacctcccttaggactgaggtaagt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggtctctactacttacctctccccaaatggctaacctcccttaggactgaggtaagt 320

                                                                       
Query: 121 gtaaatgatactctccagggaaccagtaccacttgcttggagaatccaaagcccctgggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaatgatactctccagggaaccagtaccacttgcttggagaatccaaagcccctgggt 380

                                                                       
Query: 181 tattagtgtttgcaggatacaggtaaataaattgcatggtatggcatagtagaacatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattagtgtttgcaggatacaggtaaataaattgcatggtatggcatagtagaacatgtc 440

                                                                       
Query: 241 tatttttcagaattcagaagagatggaagcaggaggatcaggagttcaaggctaatgtgg 300
           |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tataatccagaattcagaagagatggaagcaggaggatcaggagttcaaggctaatgtgg 500

                                                                       
Query: 301 gccacataaacccttgaatcaaaacaaatgaacaaaagacttagggagcgtgtgaaggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccacataaacccttgaatcaaaacaaatgaacaaaagacttagggagcgtgtgaaggtt 560

                                                                       
Query: 361 tcttttaaaacctaacaacctaaggcagcatcagaccaggacaagcccacccctggtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttaaaacctaacaacctaaggcagcatcagaccaggacaagcccacccctggtgag 620

                                                                      
Query: 421 gacactctaggtttccttacagcacactccttgggtagatacagctcctgagactagag 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacactctaggtttccttacagcacactccttgggtagatacagctcctgagactagag 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)