Query= MSMg01no441_l03.b1 MSMg01no441_l03.b1 CHROMAT_FILE:
MSMg01no441_l03.b1 PHD_FILE: MSMg01no441_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:34 2005
(640 letters)
>mm_chr4_25941280_25942319
Length = 1040
Score = 1064 bits (550), Expect = 0.0
Identities = 616/642 (95%), Gaps = 13/642 (2%)
Strand = Plus / Plus
Query: 5 gaattctttttgtttctc-tgtaaacttcaaaataatttttcagtttatattaaaaatat 63
||||||||||||||| || ||||||||| |||||| |||||||||||||||||||| |||
Sbjct: 206 gaattctttttgttt-tcatgtaaactttaaaatattttttcagtttatattaaaa-tat 263
Query: 64 tattatagttttggtattgacagcgttgaatctgtagattactaagacatattcaagaca 123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tattatagttttggtattgatagcgttgaatctgtagattactaagacatattcaagaca 323
Query: 124 caatatggcattttttactagctaagaaagtttaaaataaaatctgataactgtgctaaa 183
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caatatggcattttt-actagctaagaaagtttaaaataaaatctgataactgtgctaaa 382
Query: 184 tttgcttcaaaattcatgggagttcacacttcagttctacataagaaaaaataacctaaa 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttacttcaaaattcatgggagttcacacttcagttctacataagaaaaaataacctaaa 442
Query: 244 atcataatctacccatccaccctatcaagcatgatagtataggtattaaaaatacatgtt 303
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 443 atcataacctacccacccaccctatcaagcaggatagtataggtattaaaaatacatatt 502
Query: 304 tggaatgcagaatatttaactcaataccttggaatactcattatgtagacagtctttggc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tggaatgcagaatatttaactcaataccttggaatactcattatgtagacagtctttggc 562
Query: 364 aacataggtaaatatctcaaattcaaaaaaaatt---aaaaaaaaaagatgacagcaata 420
|||||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct: 563 aacataggtaaatatctcaaattcaaaacaaatttttaaaaaa----gatgacagcaata 618
Query: 421 atgatatcttcactgacttacactcatttcctagatgtgaagtattaagcccagctataa 480
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 619 atgatatcttcactgatttacactcatttcctagttgtgaagtattaagcccagctataa 678
Query: 481 tgataattcaacactgtatgaatggaatctgcatttttataacttccaacataagctgaa 540
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 679 tgataattcaacactgtatgaatggaatctgcatttttataactttcgacataagctgaa 738
Query: 541 tcactaatcttacagat--gttacagggagtagtagtttagaactattaatctctttcta 598
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tcactaatcttacagatatgttacagggagtagtagtttagaactattaatctctttcta 798
Query: 599 taatctgaaggactttggctctagtatattcaagacaccgaa 640
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 taatctgaaggactttggctctagtatattcaagacaccgaa 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_l03.g1 MSMg01no441_l03.g1 CHROMAT_FILE:
MSMg01no441_l03.g1 PHD_FILE: MSMg01no441_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:35 2005
(551 letters)
>mm_chr4_26138640_26139596
Length = 957
Score = 1038 bits (537), Expect = 0.0
Identities = 550/557 (98%), Gaps = 6/557 (1%)
Strand = Plus / Minus
Query: 1 tttgtttatctctgtaccccccttattaaataccaactgaaacaa-----tatttactaa 55
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 757 tttgtttatctctgtaccccccttattaaataccaactgaaacaatactttatttactaa 698
Query: 56 gttgtctgcctcctttaatatttcagggaatgatagtatccttacatggaatatattgca 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gttgtctgcctcctttaatatttcagggaatgatagtatccttacatggaatatattgca 638
Query: 116 gatttctaacaaaccactgaagaaaacaaaggatcagtagttatatttggcaaatcaaat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gatttctaacaaaccactgaagaaaacaaaggatcagtagttatatttggcaaatcaaat 578
Query: 176 atgaattataaaaagatgtaagccctgaataatagtttactacaatatcaattaaaatta 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgaattataaaaagatgtaagccctgaataatagtttactacaatatcaattaaaatta 518
Query: 236 agctcaaatattcaggattgtcaactcaattcagtccatatagatttattagcattttgt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agctcaaatattcaggattgtcaactcaattcagtccatatagatttattagcattttgt 458
Query: 296 aaagcattctggatttcttttctttgtgttctgcttggttgttcttagttattgttttga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaagcattctggatttcttttctttgtgttctgcttggttgttcttagttattgttttga 398
Query: 356 gatatggtgggcttaatcagttggccactctgacatataacttgcattacttacacataa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gatatggtgggcttaatcagttggccactctgacatataacttgcattacttacacataa 338
Query: 416 ctttatgagtaactaggcctgttaacatgtaacattgcacctagctctaatgtgatgaca 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 337 ctttatgagtaactaggcctgttaacatgtaccattgcacctagctctaatgtgatgaca 278
Query: 476 ttttcttttcttgaaag-aaaaaaaatgtacctgtaccagaggtttggctaaggtatatt 534
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttttcttttcttgaaagaaaaaaaaatgtacctgtaccagaggtttggctaaggtatatt 218
Query: 535 gttctgctgcagtttcc 551
|||||||||||||||||
Sbjct: 217 gttctgctgcagtttcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 957
Length adjustment: 10
Effective length of query: 541
Effective length of database: 947
Effective search space: 512327
Effective search space used: 512327
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
