BAC Information

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BAC

Clone NameMSMg01-442M24
Chromosome4 (Build37)
Map Location 91,224,594 - 91,224,858
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442M24.T7 (MSMg01no442_m24.b1)MSMg01-442M24.TJ (MSMg01no442_m24.g1)
ACCAG532368AG532369
length852851
length of high quality
(start - end)
271 (45 - 315)236 (76 - 311)
definitionCHROMAT_FILE: MSMg01no442_m24.b1 PHD_FILE: MSMg01no442_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:09 2005CHROMAT_FILE: MSMg01no442_m24.g1 PHD_FILE: MSMg01no442_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCTCTATGACTGACCTGAGTTCTTTTAAAATATATCCACGATCAGT
GAATTATGATAATTCTTGGGTTAGGGATGGCTGTAGAAAAGATATTGAAC
ATTACATATGCAATTCACATATGTACCTCAGAGGAAGACTGTCAAGTTTT
AGGAGTACTGTGGTAGCACATGATACTGAAATTGGCTAAGATTTGTTAAA
ATTCAGAATGGATGCCAGGAAAGAAAGAAAATGGGAAGGGGGAGAATATT
TTTTAGGATGAAAACTTTCTACATTTTTTTTTTTTAGCCAGGTATGATGC
CTTTTTAATACCTTTGTGTCTTCCCGTTCCTTTTTTATGTAAAACCACTC
CTATTTTTTTTTTTCTCTCCCCTCCTTTTTTTTTTTTTCCCCTTTCTCCC
CCCCCCCCAACTGCTTTCTTCTTTCTTCCCCTTCTTTTTCCATTCTCCTT
CACCTTTTTTTTGCACCTTTTCTCCCCCCCTTCTCTTTTCCCCCTCTTTT
TACTTTCCTCATCTCACACCCTCCTCTCCTCCTCTTTTTTATTCCATCTT
CCCTCTTTCGCTCCCCTCTCTTTATTTTCCCTTCTCTCCTTTTTCATGTT
CTCCTTCCTTTTTTCTCTCTCCCCTTTCCCCCCTCTTTTCCTATCAATTT
TATTCTCTCCTCCCTTCACCCTCCTTTTTGTTTCTCTTGCCTCTTTCTTA
CCCTGTCACACCTTTTCTATCTTTATTTTTTTTTCCCGCCACCTCTTTCT
TTCTTTTTCCCTCCCCTCTTTTTTTTTTTCCCCTTTTTTTCTCTCTCTTC
TG
CCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATC
ATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTG
TCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAA
TCTCTGGAGTTAGTTGCTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTG
TTGATTTTGTCACCCTCTATCACTTTTTTTTTTTAGACCAGCCCTCTTCT
CTGAGCTTCTTTGTTTTTTCCCCCCCCTTGTTTGCGGCCTCGTCCTCTTC
ACGGATTGTGTTCCTTCCCCCGCTCTTTTTTTTCTTCTTTCTTCCCCCCC
CCCGGCCCTCCATACTCCTTCTCTTTCTTCTTTATTTTTCCTCCCTTTTT
TTTCCCTCTTTTCTCTTTCTTCTTTTTTTTTTTCTCCTTCTCTTCCCCCC
TTTTCTTTTCCTCCCTTCTTCTCTTTTTCTCCTCCTTTTTCTTTTCTCTT
CTCTATTATTCTATTCTTCTCCCCTTTCTTTTTTTTCCTTCCTCTCCCTC
TTCCCTCTTCTCCTTGTTTCTCTTCCTCCCCCCCCTTTCTTCTTTTACTC
TTCTTTCCCTTTTTTCGTCTTTTTCCTTCTCCCGCCCTTCTTTTCTATTT
CTCCCCCTTCTTCTTTTTTTTCCCCGCGTTCCTCTTTTTCTTTTTTCTCC
CCCTTTACTCCACCGCCTACTTTCTCTTTTCTTCTTCTTTCTCTCTTCCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_m24.b1 MSMg01no442_m24.b1 CHROMAT_FILE:
MSMg01no442_m24.b1 PHD_FILE: MSMg01no442_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:09 2005
         (271 letters)



>mm_chr4_91224388_91225058
          Length = 671

 Score =  489 bits (253), Expect = e-143
 Identities = 262/265 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctctatgactgacctgagttcttttaaaatatatccacgatcagtgaattatgat 66
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctgtgactgagctgagttcttttaaaatatatccacgatcagtgaattatgat 266

                                                                       
Query: 67  aattcttgggttagggatggctgtagaaaagatattgaacattacatatgcaattcacat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aattcttgggttagggatggctgtagaaaagatattgaacattacatatgcaattcacat 326

                                                                       
Query: 127 atgtacctcagaggaagactgtcaagttttaggagtactgtggtagcacatgatactgaa 186
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 327 atgtacctcagaggaagactgtcaagttttaggagtactgtggtagtacatgatactgaa 386

                                                                       
Query: 187 attggctaagatttgttaaaattcagaatggatgccaggaaagaaagaaaatgggaaggg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attggctaagatttgttaaaattcagaatggatgccaggaaagaaagaaaatgggaaggg 446

                                    
Query: 247 ggagaatattttttaggatgaaaac 271
           |||||||||||||||||||||||||
Sbjct: 447 ggagaatattttttaggatgaaaac 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)