BAC Information

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BAC

Clone NameMSMg01-443M03
Chromosome4 (Build37)
Map Location 26,386,056 - 26,386,585
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625732, Fut9, LOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079
Downstream geneGng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443M03.T7 (MSMg01no443_m03.b1)MSMg01-443M03.TJ (MSMg01no443_m03.g1)
ACCAG533087AG533088
length718732
length of high quality
(start - end)
508 (79 - 586)347 (82 - 428)
definitionCHROMAT_FILE: MSMg01no443_m03.b1 PHD_FILE: MSMg01no443_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:27 2005CHROMAT_FILE: MSMg01no443_m03.g1 PHD_FILE: MSMg01no443_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACGNAGACAT
CCGCGGAATTCTTGAAATATCCTATGACATTTAAGATATTGATGGAGAAA
TTCATTCAGAAATAAGAGAAATCTGAGTAATGATATATACATATATATAT
AACATAATTATATAACTACATTACATACTATATAACAGTTATATTTATAG
TTACTATAATATATAATTAATATATAAATATATAACATATATAATTACAT
GTAATCTTTAATAATATATAATTATACAGTATAATACTTTAGAGAAAAAT
TTTGTACCATATAGTATATGACTTGTTCTTTGCCATTGAGTAACCAGCAA
TTCAACAGCACAAATATATTGTTTCCACTTCAAATTGCTGTCTTTCCTGA
CACTAAAGGTTCATTATAGTCACTCACTCGTTAGTGCTCATGGATATTTG
CTCCTTCACATCTGTTCTCTATCATTTAGTAACACATAGAGGGTGACCTG
TGGGAACCATACTTATACTTTCTTATTCATTTGCCCTGCTTGATTGCTTT
ATTTAAAATATATTTTATGAGCTACAGAAAGTAACCAAGGAGCTAAAGGG
ATCTGCAACCCTGTAGGTGGAACAACCATATGAATTATTTAGTACCCCCC
CAGATTTCGTGTTTTTAGCTGCATATGTATTATAAGATGGTCTGACCGGT
CATCATTGTTTACATACG
TTTTTGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGACCACATAAAGCTCT
AGAAGAAGGAAGATCAAAGTATGGATACTTTGGTCCTTCTTAGAAGGCAG
AACAAAATACCCATGGGAGGAGATACTGAGACAAAGTGTGGAGCAGAGAC
TGAAGGAAAGGCCACCCAGACACTGCCCTACCTAGGGACCCATCCCATAT
ACAGTTACCAAACCCAGACAGTATTGTGGATGTCAACAAGTGCTTGCTGA
CAACAGCCTAATATAGCTGTCTTCTGATAACTGTGCCAGAGCCTGACAAA
TAAAGAGGTGGATGCTCTCAGCCTACCATTGGACTGAGCACAGGGTCCCC
AATGGAGAATCTAGAGAAAGGACCCAGGGAGTTGAAAGGGCTTGCAGCCC
CATAGGAGGAACATCAATATGGACCAACCTGTACCCCCAGAACTTCCAGG
GACTAAACTACCTACCAGAGTGTACACATGGAGGGATTCATGGCTCCAGC
CGCATATGTACGACCGGATGGTCTTTGTCTAATAAATGGGAGGACAGGTC
CTTGGTCCTTTGAACGGCCCACGGCCTCCCTAAAGGTAATTGCCCCCCCC
CGTCCTTTGCTCCTCCCCTTTTTTTTTGTTCCCGCCTTTTCCCTTTTCCC
CTTTTTTTTTCCCTTTTTACCCCTCTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_m03.b1 MSMg01no443_m03.b1 CHROMAT_FILE:
MSMg01no443_m03.b1 PHD_FILE: MSMg01no443_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:27 2005
         (508 letters)



>mm_chr4_26385692_26386599
          Length = 908

 Score =  764 bits (395), Expect = 0.0
 Identities = 489/531 (92%), Gaps = 24/531 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaagatattgatggagaaattcattcagaaataagagaaatctgagtaatgatatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 atttaagatattgatggagaaattcattcagaaataagagaaatctgagtaatgatatat 835

                                                                       
Query: 61  ac--atatatatataacataattatataactacattacatactatataacagttatattt 118
           ||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 834 acatatatatatataacataattatataactacattacatactctataacagttatattt 775

                                                                       
Query: 119 atagttactataatatataattaatata-ta--aatatataacatatataattacatgta 175
           |||||||||||||||||||||||||||| ||  ||||||||| ||||||||||| |||||
Sbjct: 774 atagttactataatatataattaatatattatcaatatataa-atatataattatatgta 716

                                                                       
Query: 176 atct--------------tta-a--taatatataattatacagtataatactttagagaa 218
           ||||              ||| |  ||||||||||||||| |||||||||||||||||||
Sbjct: 715 atctataataatatataattatatgtaatatataattatatagtataatactttagagaa 656

                                                                       
Query: 219 aaattttgtaccatatagtatatgacttgttctttgccattgagtaaccagcaattcaac 278
           |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| 
Sbjct: 655 aaattttgtaccatatagtatatgacatgaactttgccattgagtaaccagcaattcaag 596

                                                                       
Query: 279 agcacaaatatattgtttccacttcaaattgctgtctttcctgacactaaaggttcatta 338
           | ||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||
Sbjct: 595 aacacaaatatattgtttatacttcaaattgctgtctttcctgacactaagggttcatta 536

                                                                       
Query: 339 tagtcactcactcgttagtgctcatggatatttgctccttcacatctgttctctatcatt 398
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 535 tagtcactcactcattagtgctcatggatatttgctccttcacatctgttctctatcctt 476

                                                                       
Query: 399 tagtaacacatagagggtgacctgtgggaaccatacttatactttcttattcatttgccc 458
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 475 tagtaacacacagagggtgacctgtgggaaccatacttatactttcttaatcatttgccc 416

                                                              
Query: 459 tgcttgattgctttatttaaaatatattttatg-agctacagaaagtaacc 508
           |||| ||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct: 415 tgctcgattgttttatttaaaatatattttatggagctagagaaagtaacc 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)