BAC Information

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BAC

Clone NameMSMg01-443O23
Chromosome4 (Build37)
Map Location 55,231,371 - 55,420,330
singlet/doubletdoublet
Overlap geneLOC670211, Rad23b, LOC666953
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
Downstream geneLOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443O23.T7 (MSMg01no443_o23.b1)MSMg01-443O23.TJ (MSMg01no443_o23.g1)
ACCAG533221AG533222
length754775
length of high quality
(start - end)
333 (81 - 413)338 (81 - 418)
definitionCHROMAT_FILE: MSMg01no443_o23.b1 PHD_FILE: MSMg01no443_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:41 2005CHROMAT_FILE: MSMg01no443_o23.g1 PHD_FILE: MSMg01no443_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,419,998 - 55,420,330)(55,231,371 - 55,231,706)
sequence
CCCCCCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAACAGAATTACCCAAATTGGAGGCCAATAGAGATTAG
GGACACACTGGCAAGATATGGTCCAAATTCAAGAAACCAACTCATACAGG
AGGAGCAGTGGGGAAGAAGGAAATGGACAACTCAGGGAACTAGAATGGGG
GAACGTGATGGAGGATAGTGACTGGGGGATGATATGGCCAGGGAACCAGA
GCCAGAGAGGAGACATGATCCCAAGGGAGAGATCAGATATTGGGGATGAG
CGGTATACTGGTTTTGTGTCAACTTGATTCTAGCTGGAGTTATCACAGAG
AAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCCAGCTGTGGGGCA
TTTTCTCAATTAGTGATCAAGAGGGAGAGGCACCTTATGGGCGCGACCAT
CTCTGGCCTGGTAATCTTGGGCTCTATAAGAGAGCAGGCTGATTACGCCA
GGTGTAGCATGCTACCAAAGAATATCCCTCCCCGCCTTCTTGCACCATTT
TCTTGTTTTCCGACCCCGTTTGATTCCTCCCGCCTTGACCCCCTTCTCTT
GTTTGAACTTCACTCTGTTAAAAAAACACCCCTTTTTTATTTCTTTTTAT
TTTCCCACCCCGCTTCCTTCTTTCCCTCTCCATTTCCCCGGTTCGTCTCC
CATTTCTCTAGCCCCCATTTTCTCGCCCTACCCTTTCCCTTTCTTCCCTT
CCTC
TTTTTTTCGATGATAGGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGCCTGGGAGTTGGGGAT
GGATGAAGTGGTACTGTGCCATTCCTGCCCTCAAAGAGATTATAATCCAA
CAGATGGCATGCCTATGGAAATGGTTAGACAGCCCCAGTCAAAAATGGGT
GGTCACTAGGACCCAGGCAGCAGCCAGAAGCGGCAACCTCCAAGCTCTTA
GGTGACAAGGTTCCTTCTGCCTTCCTTCCTTTATAGTAAGAGACAGCCCC
AGAAAGTGCCTTCATATGTGACCTCCAGTCAGACTGGCAGGGTGTGAATG
TGGCAGAGTGTGACTCCAGCTCTGGGCTCTTGCCTTGTGTTGAGGGGTGG
TTAACATCCATCAACCTCAGTGTCCTCGTCTTTAATATACGACTGACTGA
GCTAACTACTTCATATTTTGGATGAAGGATGAGACTATGTGCCCCCACTA
TTTGGTACAATTGGCAACATGCCTCCCTTGTTAAAGTTCTTGCCTCTTAA
GTGCGATGTTTTCCTCTTTTTATCCCCCCTATCTCTTGTGTTTTGGTTTT
TTTCCGATTGCCCCGTCTGCTTATTCTCCCGGTAATAACCCTCCAACCTC
TCTCTTTTTTTTATTTTTCCCACCTCCTTCTTTTTTTTCCCTCCCCCTTA
TTTTATTATATTCCCCCCTTTTTCCCCCTTTTTCCCCTTCTTCTTCTCCC
CTGTTTTTCTCCCCCTCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_o23.b1 MSMg01no443_o23.b1 CHROMAT_FILE:
MSMg01no443_o23.b1 PHD_FILE: MSMg01no443_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:41 2005
         (333 letters)



>mm_chr4_55419904_55420636
          Length = 733

 Score =  621 bits (321), Expect = 0.0
 Identities = 330/333 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaggccaatagagattagggacacactggcaagatatggtccaaattcaagaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tggaggccaatagagattagggacacactggcaagatatggtccaaattcaagaaaccaa 368

                                                                       
Query: 61  ctcatacaggaggagcagtggggaagaaggaaatggacaactcagggaactagaatgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctcatacaggaggagcagtggggaagaaggaaatggacaactcagggaactagaatgggg 308

                                                                       
Query: 121 gaacgtgatggaggatagtgactgggggatgatatggccagggaaccagagccagagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaacgtgatggaggatagtgactgggggatgatatggccagggaaccagagccagagagg 248

                                                                       
Query: 181 agacatgatcccaagggagagatcagatattggggatgagcggtatactggttttgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agacatgatcccaagggagagatcagatattggggatgagcggtatactggttttgtgtc 188

                                                                       
Query: 241 aacttgattctagctggagttatcacagagaaaggagcttcagttggggaagtgcctcca 300
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aacttgacaccagctggagttatcacagagaaaggagcttcagttggggaagtgcctcca 128

                                            
Query: 301 tgagatccagctgtggggcattttctcaattag 333
           |||||||||||||||||||||||||||||||||
Sbjct: 127 tgagatccagctgtggggcattttctcaattag 95


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no443_o23.g1 MSMg01no443_o23.g1 CHROMAT_FILE:
MSMg01no443_o23.g1 PHD_FILE: MSMg01no443_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:41 2005
         (338 letters)



>mm_chr4_55231171_55231908
          Length = 738

 Score =  650 bits (336), Expect = 0.0
 Identities = 336/336 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggcctgggagttggggatggatgaagtggtactgtgccattcctgccctcaaagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggcctgggagttggggatggatgaagtggtactgtgccattcctgccctcaaagagat 260

                                                                       
Query: 61  tataatccaacagatggcatgcctatggaaatggttagacagccccagtcaaaaatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataatccaacagatggcatgcctatggaaatggttagacagccccagtcaaaaatgggt 320

                                                                       
Query: 121 ggtcactaggacccaggcagcagccagaagcggcaacctccaagctcttaggtgacaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcactaggacccaggcagcagccagaagcggcaacctccaagctcttaggtgacaagg 380

                                                                       
Query: 181 ttccttctgccttccttcctttatagtaagagacagccccagaaagtgccttcatatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccttctgccttccttcctttatagtaagagacagccccagaaagtgccttcatatgtg 440

                                                                       
Query: 241 acctccagtcagactggcagggtgtgaatgtggcagagtgtgactccagctctgggctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acctccagtcagactggcagggtgtgaatgtggcagagtgtgactccagctctgggctct 500

                                               
Query: 301 tgccttgtgttgaggggtggttaacatccatcaacc 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccttgtgttgaggggtggttaacatccatcaacc 536


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)