BAC Information

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BAC

Clone NameMSMg01-444I20
Chromosome4 (Build37)
Map Location 85,717,742 - 85,718,244
singlet/doubletsinglet
Overlap genenone
Upstream geneD530005L17Rik, LOC100040303, Sh3gl2, A930009N24, LOC668052
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I20.T7 (MSMg01no444_i20.b1)MSMg01-444I20.TJ (MSMg01no444_i20.g1)
ACCAG533692AG533693
length1,182734
length of high quality
(start - end)
---506 (74 - 579)
definitionCHROMAT_FILE: MSMg01no444_i20.b1 PHD_FILE: MSMg01no444_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:29 2005CHROMAT_FILE: MSMg01no444_i20.g1 PHD_FILE: MSMg01no444_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTGACAGTATCATCAGACGAGTAGAGAATAGAGCGGTGGAGGCTGGAGT
GTACGCTCACGATTATGGAGCGGCGTTCTTGCATGTTGTTTAGGGCCCTG
GCGTCACATAAATCCACCCTTCCCCTAGTTTATTCACACCGGCACACGGC
CTCGTCTACGTAGTACGCTCTACATCCTTACATATCCTCACATGCGCGGA
ATTCTTGTGCGTATCCGCGATAGCCCCTCTTTACACCTGGTCCTCCCATT
TTCATTGCCCTAGCNGCTAACTGAAATATTGCGACACGTGGATAGCCTGA
ACGGTGTGTGAATGGATATCCCAATAAAGTATACATTGATAGTGACTGAC
CGTATAGGTCTACCCGTCTACNCAGCTAGCTCCAAATAACGTCTTACCAA
TCCCATCCGTCTATCATGTAATCACCACACAATAAAAAACGTGCACGTAG
GGTGCACCGCAAGCTGATATATTCTCCTATCATGAATATTAAGAGCTGCC
AACCACGAGATTGAATTCCACCTTTTATCCCTTGCTGTTGTTCTATCTCC
TGAGCTTGTATTTAGCGTCAATTCGCATCTCAAGTGATCGCAATATAGTA
ACAATGGGTGCACGAACAAAGCAATTAGAATAGATATTTAAGTTACGGCA
CGGACTATACGATATTTATATTGTAAACACGTACACCCATATATGTCTTT
TCGGACTATCGCTGTAAGTTAAGGGAGATATGCGCACGAATCGCGAACAC
CGNCGGATAATAGATTATAGACAAACAGTGGCGTAAAACGGGAAAAAGAA
ATAGAAAATAATTATGTCGAATATAGATAGCGGCCCAGCGTGGCTAATAC
TATACAGCCCAATCGGACCCGGTAACTTAGCTAATGATTCGCCCAATTCG
CCGCCGCCCGACAAACGGTAATAGAGAAAAATGGTGTGATCTGCGGTAAT
ATGCCCGCGTCGCGCGGGCGGCGCGATCTCGATACAACATAATTGCACCG
TCGCGTCCAAACCACGTGCCGCGCAGAAAGACAGGGGAAATAACAAGAGA
ATGATAGTTGCACTCCACGAGGACACAAGACAAAAGACGCCCGACTTATG
GTTCACGAAGTGGCGGGTGACACCCCATAACTGCCGCGGGGGCCCTTTAC
GGTCGTCACAATAAGACGCGGTACAAAACAAG
NCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCATTGGTGTAAAGAGATATATGCGA
AAACAGTAGCATGATGGCCTTTCTTCCCTGTGGGTCAGGTTTACTTGTGT
CTTCTCCCGTTCCCTTGCTTATCTGAAGCTTGCATTCATTTGCTCTCTTT
TGAGAAACAGGGCAATTATGAAAGAGAGAGAAAAATGACAGACATTATGA
ATTAGGCCCTCAACCACAACTTGTCCTGGCCCGCTGTACACTCCAAGAAT
ATTCCCTGACACCGGTTTTATTTTCAGAATCCCCCAAGGCACTGGAGGAC
AACAACACATTTATCTTTATCCTGGCCTCACAAAGCACAGTCTCTAATGA
AAGCTGTATCAGCAAAGAAGTGCGCTGCAGAGAATCCCAAGCGCTAAGCC
AGCTGTAGCATCAGGTCCTAGCAATGTGCCCCAGGTCTGTAGGAGCAGCA
GGGATTGCTTCTCCCTGGAGAATAGGAAGTTCACTATAAGGGCATGGTAG
CTGCACAGTAAAGCAAGAACAGGAAGGCTCACATCAAGGGAAATTAAAGC
ATGTGTGAAGAACATGAGGGAGATGAGAATCAAATCAGCAAGCTTTTTGA
TTTTGCTGTTACAGGTTTTGGCCATACCTTTGGTGACCAAGAAGGGTTAA
GCGTAATCTGTACCGCCTTTATTTACCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i20.g1 MSMg01no444_i20.g1 CHROMAT_FILE:
MSMg01no444_i20.g1 PHD_FILE: MSMg01no444_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:29 2005
         (506 letters)



>mm_chr4_85717542_85718447
          Length = 906

 Score =  934 bits (483), Expect = 0.0
 Identities = 498/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcattggtgtaaagagatatatgcgaaaacagtagcatgatggcctttcttccctgtgg 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcattggtgtaaagagatttatgcgaaaacagtagcatgatggcctttcttccctgtgg 260

                                                                       
Query: 61  gtcaggtttacttgtgtcttctcccgttcccttgcttatctgaagcttgcattcatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcaggtttacttgtgtcttctcccgttcccttgcttatctgaagcttgcattcatttgc 320

                                                                       
Query: 121 tctcttttgagaaacagggcaattatgaaagagagagaaaaatgacagacattatgaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcttttgagaaacagggcaattatgaaagagagagaaaaatgacagacattatgaatt 380

                                                                       
Query: 181 aggccctcaaccacaacttgtcctggcccgctgtacactccaagaatattccctgacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 aggccctcaaccacaacttgtcctggcccgctgtacactccaagaatattcactgacacc 440

                                                                       
Query: 241 ggttttattttcagaatcccccaaggcactggaggacaacaacacatttatctttatcct 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttagattttcagaatcccccaaggcactggaggacaacaacacatttatctttatcct 500

                                                                       
Query: 301 ggcctcacaaagcacagtctctaatgaaagctgtatcagcaaagaagtgcgctgcagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcctcacaaagcacagtctctaatgaaagctgtatcagcaaagaagtgcgctgcagaga 560

                                                                       
Query: 361 atcccaagcgctaagccagctgtagcatcaggtcctagcaatgtgccccaggtctgtagg 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcccaagtgctaagccagctgtagcatcaggtcctagcaatgtgccccaggtctgtagg 620

                                                                       
Query: 421 agcagcagggattgcttctccctggagaataggaagttcactataagggcatggtagctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcagcagggattgcttctccctggagaataggaagttcactataagggcatggtagctg 680

                                  
Query: 481 cacagtaaagcaagaacaggaag 503
           |||||||||||||||||||||||
Sbjct: 681 cacagtaaagcaagaacaggaag 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)