Query= MSMg01no444_l11.b1 MSMg01no444_l11.b1 CHROMAT_FILE:
MSMg01no444_l11.b1 PHD_FILE: MSMg01no444_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:42 2005
(244 letters)
>mm_chr4_140132039_140132682
Length = 644
Score = 462 bits (239), Expect = e-135
Identities = 242/243 (99%)
Strand = Plus / Minus
Query: 1 caatgcctttagctgctgagccttgtcttcagcctgtcagcgtgagttacaccttgctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caatgcctttagctgctgagccttgtcttcagcctgtcagcgtgagttacaccttgctct 384
Query: 61 cataggaggggaacaaggcttagcatttcaggacttaacctactgtcagccaacctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cataggaggggaacaaggcttagcatttcaggacttaacctactgtcagccaacctctct 324
Query: 121 tggtcagacatcacttaaacgtgaacacaggatgcctgaagcagtgtcaaccccatgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggtcagacatcacttaaacgtgaacacaggatgcctgaagcagtgtcaaccccatgtaa 264
Query: 181 gaccctgtgttcagaagtcctcagacagtatgacctggcttctgagagacagctgccagg 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaccctgtggtcagaagtcctcagacagtatgacctggcttctgagagacagctgccagg 204
Query: 241 ctg 243
|||
Sbjct: 203 ctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no444_l11.g1 MSMg01no444_l11.g1 CHROMAT_FILE:
MSMg01no444_l11.g1 PHD_FILE: MSMg01no444_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:42 2005
(428 letters)
>mm_chr4_139944800_139945627
Length = 828
Score = 774 bits (400), Expect = 0.0
Identities = 421/432 (97%), Gaps = 8/432 (1%)
Strand = Plus / Plus
Query: 1 agacaatcccgtggggagccaccagagccatggtctttgttctatttctcctttgacctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacaatcccgtggggagccaccagagccatggtctttgttctatttctcctttgacctc 260
Query: 61 actgggtgctggcacgcagcccactggtcaattctatttttgagacggcgcccagcttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgggtgctggcacgcagcccactggtcaattctatttttgagacggcgcccagcttgt 320
Query: 121 cctctggatgtacctgtaacagcatggaggctaaccccctcacaccacagggacagtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctggatgtacctgtaacagcatggaggctaaccccctcacaccacagggacagtcaa 380
Query: 181 ctgatgcatgttcatagagttggctcgttttatgcccctgcctcagctgtccatacagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgatgcatgttcatagagttggctcgttttatgcccctgcctcagctgtccatacagag 440
Query: 241 ttttg----tttatggggatgggagtggtaaaagtttaagggactcacccaaggaaacca 296
| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ----gcaggtacatggggatgggagtggtaaaagtttaagggactcacccaaggaaacca 496
Query: 297 acgctaacagtgctgaaggtcgtcaccagagccagccgaagcttccccaagccttattcc 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acgctaacagtgctgaaggccgtcaccagagccagccgaagcttccccaagccttattcc 556
Query: 357 ggagtctaaagaactctgagagaaacctcttttttttacttttgccctcgggtgttttgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggagtctaaagaactctgagagaaacctcttttttttacttttgccctcgggtgttttgt 616
Query: 417 tatagcagttca 428
||||||||||||
Sbjct: 617 tatagcagttca 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
