BAC Information

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BAC

Clone NameMSMg01-444N12
Chromosome4 (Build37)
Map Location 107,707,209 - 107,707,768
singlet/doubletsinglet
Overlap genenone
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn
Downstream geneScp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444N12.T7 (MSMg01no444_n12.b1)MSMg01-444N12.TJ (MSMg01no444_n12.g1)
ACCAG533915AG533916
length759753
length of high quality
(start - end)
173 (78 - 250)556 (79 - 634)
definitionCHROMAT_FILE: MSMg01no444_n12.b1 PHD_FILE: MSMg01no444_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:52 2005CHROMAT_FILE: MSMg01no444_n12.g1 PHD_FILE: MSMg01no444_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGAAACTCGCGGA
TTCTAAAACTATGTTGCTTAAAACCTGCCTCAGCACTGTCTCCTAGGTTC
TGGTAAGCTGTGCATTTGACTTCCCAAGTAATAGTATTAAAATATTATTA
TTTTTTATCACTATTGAGGCAGGATCTTGCTATGTATACCTGGTTGACCT
GGAACTCACTATGAAGACTAGGTCGGTCTTAAACTCTGAGATCTGGGGAG
GTTTATGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACTGAGTG
AGTTCCAGGACAGCCAGATTTACTCATATAAACCCTCTCTCGAAAAAAAC
AAGAAAAAACATATTTTTTCTCCACAACACCTCTGAGATCTGCCTGCTCT
GCCTTCCATGGNCTAGCTGGGATTAAAGCTGTGCACTGTCAGGTCTGGCT
GATTGTTTTGCTGTTGTTCTTTAATTTAGCATGTGCTGTATGGAGTGTAT
GGAGGGCAAAGGACGCTTATGGACATTGGTTCTTCTCAAAGATAAACCCA
CGCCTGCCGGACAACAGGCCCCCTTACCTGGTGATGCAGTCTCCTTGCCG
ATCGCGGGTTTTTTCTTGTTGAGGGCTCTGCCAACAATTCCACCGGTTCC
TCCTTTTTTTTTTTTTGAGGAACCCCGAGGGGTCCCCCTCTTCCCCCTGG
ACCCCCGTATGCTCGGGAGGGCATTTTTCTTATATTTCTTCCGGTAGGGT
TTTTATTTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCCCTTGAGCTCAGGACT
CAAGACCTTTCCTCATCCACGAGCAGAGTCCTGAGTGCTGAGCGGCCGAC
AGGAGCTTGATCAGACAGAGTGCTGTTTGGGTCAGCAGGGCCTCTCTAAA
GGTTTTCTTGTTGCTGCTGTTTTATCATTAGTACTGGGGATTGAACTCAG
GTCACTGTGCATACCAGGCAAACGATCGCCTGCTAAGCCCCATCCTCAGC
CCTCTATTGTTTATTTACTTTAATTTTGAGACAGGACCTCATCAAGTTGC
CCATATCTTGAGCTTTTGATCTGTTTGCCTACTACTTCTCAAGTAAGAAA
GCTTATAGGCCCGGAACTCTCACATCTGACTGAAGGCTTTTGACAGAGGC
CAAGACTTGGGACTGCAGAGATGGCTCAGTCGGTAAAGTGCTTACAGGAA
GACCTGAGTTCAATTCCCAGCACCCATATCTAAAAAATAAAGCATAATGG
TGTGTACCAATAGTCTCAGAAATTGGAGGTGTTGGGTAGAGACAGGATCT
ATGGGGCTTGCTGGTAGTTAGTCTAGCTTAATTGGCGAATTCTAGGCTCC
TTTTAACTAGGGTTACCAGGGTGGAAACCTGGACCAATTTTTATAATGGT
TGCCATCCAAGCCTGACAACCTGAAGTTTGGATAACCAGCACCCCTAGAT
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_n12.g1 MSMg01no444_n12.g1 CHROMAT_FILE:
MSMg01no444_n12.g1 PHD_FILE: MSMg01no444_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:52 2005
         (556 letters)



>mm_chr4_107707013_107707968
          Length = 956

 Score =  996 bits (515), Expect = 0.0
 Identities = 548/561 (97%), Gaps = 6/561 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcctcccttgagctcaggactcaagacctttcctcatccacgagcagagtcctgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ctcctcccttgagctcaggactcaagacctttcctcatccacgagcagagtcctgagtgc 256

                                                                       
Query: 61  tgagcggccgacaggagcttgatcagacagagtgctgtttgggtcagcagggcctctcta 120
           |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 257 tgagtggccgacaggagcttgatcagacagagtgctgtttgggtcagcggggcctctcta 316

                                                                       
Query: 121 aaggttttcttgttgctgctgttttatcattagtactggggattgaactcaggtcactgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 317 aaggttttcttgttgctgctgttttatcattagtactggggattgaactcaggtcactat 376

                                                                       
Query: 181 gcataccaggcaaacgatcgcctgctaagccccatcctcagccctcta----ttgtttat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 377 gcataccaggcaaacgatcgcctgctaagccccatcctcagccctctattatttgtttat 436

                                                                       
Query: 237 ttacttt-aattttgagacaggacctcatcaagttgcccatatcttgagcttttgatctg 295
           ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tta-tttaaattttgagacaggacctcatcaagttgcccatatcttgagcttttgatctg 495

                                                                       
Query: 296 tttgcctactacttctcaagtaagaaagcttataggcccggaactctcacatctgactga 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgcctactacttctcaagtaagaaagcttataggcccggaactctcacatctgactga 555

                                                                       
Query: 356 aggcttttgacagaggccaagacttgggactgcagagatggctcagtcggtaaagtgctt 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggcttttgacagaggccaagacttgggactgcagagatggctcagtcggtaaagtgctt 615

                                                                       
Query: 416 acaggaagacctgagttcaattcccagcacccatatctaaaaaataaagcataatggtgt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 616 acaggaagacctgagttcaattcccagcacccatatctaaaaaataaagcttaatggtgt 675

                                                                       
Query: 476 gtaccaatagtctcagaaattggaggtgttgggtagagacaggatctatggggcttgctg 535
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gtacctatagtctcagaaatgggaggtgttgggtagagacaggatctatggggcttgctg 735

                                
Query: 536 gtagttagtctagcttaattg 556
           | |||||||||||||||||||
Sbjct: 736 gcagttagtctagcttaattg 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)