Query= MSMg01no445_p05.b1 MSMg01no445_p05.b1 CHROMAT_FILE:
MSMg01no445_p05.b1 PHD_FILE: MSMg01no445_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:20 2005
(533 letters)
>mm_chr4_53755226_53756158
Length = 933
Score = 698 bits (361), Expect = 0.0
Identities = 423/451 (93%), Gaps = 13/451 (2%)
Strand = Plus / Minus
Query: 92 gccttcatcactagcctctttttacatgtcctgttatagcaataaaatgcaacttctcag 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gccttcatcactagcctctttttacatgtcctgttatagcaataaaatgcaacttctcag 874
Query: 152 cccggcagcggtggcccatgcttttaaaggacgatctctctgagtttgaggccagcctgg 211
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cccggcagtggtggcccatgcttttaaaggacgatctctctgagtttgaggccagcctgg 814
Query: 212 tctacagggcaagtgaggtcaagaacagccaaggctacacagagaaaccctatctc---- 267
||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 813 tctacagagcaagtgaggtccagaacagccagggctacacagagaaaccctatctcaaaa 754
Query: 268 -----atattttacaaaaacaaaatcaagtaaccacccagacaaaagcaatatgacacag 322
| | ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 753 aaaaaaaa----acaaaaacaaaatcaagtaaccacccaaacaaaagcaatatggcacag 698
Query: 323 cctttttagcctatgtgaccttatatgctgttttcttttttagtgtgcctctgactctga 382
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 cctttctagcctatgtgaccttatatgctgttttcttttttagtgtgcctctgactctga 638
Query: 383 atacaatgaaaatcatgttttcgctccagtctttgagaaagaacccagctttcctaaaag 442
||||||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||
Sbjct: 637 atacaatgaaaatcatgttttcgatccagtctctgagaaataacccagttttcctaaaag 578
Query: 443 ccaggtgagttgattttcccagtgttcccactgatcatgtactaatacacaaagccaaat 502
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acaggtgagtttattttcccagtgttcccactgatcatgtactaatacacaaagccaaat 518
Query: 503 acatcagtcagcttctccattaacctacaac 533
||||||||||||| |||||||||||||||||
Sbjct: 517 acatcagtcagctcctccattaacctacaac 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_p05.g1 MSMg01no445_p05.g1 CHROMAT_FILE:
MSMg01no445_p05.g1 PHD_FILE: MSMg01no445_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:20 2005
(463 letters)
>mm_chr4_53573803_53574670
Length = 868
Score = 872 bits (451), Expect = 0.0
Identities = 462/468 (98%), Gaps = 5/468 (1%)
Strand = Plus / Plus
Query: 1 tatatggacaaagtgctgatggtaagtacttcaaatgt-ggccacagtgtttccaaaata 59
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tatatggacaaagtgctgatggtaagtacttcaaatgtcggccacagtgtttccaaaata 260
Query: 60 ctcttcgaggttaattcccacaaagtgacacagtgttaaaattgtagtactgaatcatga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttcgaggttaattcccacaaagtgacacagtgttaaaattgtagtactgaatcatga 320
Query: 120 atgaagtttatcttggagaaattgaggtaggtcttcctggtacagaaacaaccatttcaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagtttatcttggagaaattgaggtaggtcttcctggtacagaaacaaccatttcaa 380
Query: 180 atactactctttagttctacccactccctgtaccatcctgcctgccccctcctttgtgct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactactctttagttctacccactccctgtaccatcctgcctgccccctcctttgtgct 440
Query: 240 atatggatttgaatagactttgaaacatgtcttctagctactgatcaaagtgccctttcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatggatttgaatagactttgaaacatgtcttctagctactgatcaaagtgccctttcc 500
Query: 300 caaagtagatcttaaagacaaaggccttgttctcagagcctttctgcctc----cagcaa 355
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 caaagtagatcttaaagacaaaggccttgttctcagagcctttctgcctctctccagcaa 560
Query: 356 ccacttatacaaggctattactgtcaaccctagtcaaccctagttaanatccattatcct 415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 ccacttatacaaggctattactgtcaaccctagtcaaccctagttaaaatccattatcct 620
Query: 416 aaatcccacaagctggattgaaggtaaacgaaatacaggaagtagccc 463
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcccacaagctggattgaaggtaaacgaaatacaggaagtagccc 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 868
Length adjustment: 10
Effective length of query: 453
Effective length of database: 858
Effective search space: 388674
Effective search space used: 388674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
